Variant report

Variant	rs56246162
Chromosome Location	chr11:119658388-119658389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11217595	1.00[ASN][1000 genomes]
rs11607827	1.00[ASN][1000 genomes]
rs12793318	1.00[ASN][1000 genomes]
rs12808728	1.00[ASN][1000 genomes]
rs1815888	1.00[ASN][1000 genomes]
rs1815889	1.00[ASN][1000 genomes]
rs1815890	1.00[ASN][1000 genomes]
rs34004290	1.00[ASN][1000 genomes]
rs34071565	1.00[ASN][1000 genomes]
rs34518191	1.00[ASN][1000 genomes]
rs34699720	1.00[ASN][1000 genomes]
rs35095598	1.00[ASN][1000 genomes]
rs35163144	1.00[ASN][1000 genomes]
rs35385093	1.00[ASN][1000 genomes]
rs35825681	1.00[ASN][1000 genomes]
rs471714	1.00[ASN][1000 genomes]
rs472665	1.00[ASN][1000 genomes]
rs475178	1.00[ASN][1000 genomes]
rs475867	1.00[ASN][1000 genomes]
rs476877	1.00[ASN][1000 genomes]
rs553492	1.00[ASN][1000 genomes]
rs554338	1.00[ASN][1000 genomes]
rs55831600	1.00[ASN][1000 genomes]
rs56303695	1.00[ASN][1000 genomes]
rs56363339	1.00[ASN][1000 genomes]
rs580318	1.00[ASN][1000 genomes]
rs61897696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897706	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899012	1.00[ASN][1000 genomes]
rs61899013	1.00[ASN][1000 genomes]
rs61899015	1.00[ASN][1000 genomes]
rs61899017	1.00[ASN][1000 genomes]
rs61899019	1.00[ASN][1000 genomes]
rs61899020	1.00[ASN][1000 genomes]
rs61899021	1.00[ASN][1000 genomes]
rs61899037	1.00[ASN][1000 genomes]
rs61899038	1.00[ASN][1000 genomes]
rs628244	1.00[ASN][1000 genomes]
rs71484150	1.00[ASN][1000 genomes]
rs72994633	1.00[ASN][1000 genomes]
rs72994637	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv528824	chr11:119650105-119661809	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119654400-119659800	Weak transcription	Fetal Heart	heart
2	chr11:119657200-119658400	Enhancers	Fetal Brain Male	brain
3	chr11:119657200-119663600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119657600-119658400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:119657600-119658400	Enhancers	GM12878-XiMat	blood
6	chr11:119658000-119658400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr11:119658000-119661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:119658000-119662400	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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