Variant report

Variant	rs61899020
Chromosome Location	chr11:119778398-119778399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119776418..119778910-chr11:119779204..119783369,3	MCF-7	breast:
2	chr11:119763412..119765183-chr11:119776364..119779168,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11217595	1.00[ASN][1000 genomes]
rs11600005	0.97[EUR][1000 genomes]
rs11607827	1.00[ASN][1000 genomes]
rs12793318	1.00[ASN][1000 genomes]
rs12808728	1.00[ASN][1000 genomes]
rs17123461	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17123466	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1815888	1.00[ASN][1000 genomes]
rs1815889	1.00[ASN][1000 genomes]
rs1815890	1.00[ASN][1000 genomes]
rs34004290	1.00[ASN][1000 genomes]
rs34071565	1.00[ASN][1000 genomes]
rs34518191	1.00[ASN][1000 genomes]
rs34699720	1.00[ASN][1000 genomes]
rs35095598	1.00[ASN][1000 genomes]
rs35163144	1.00[ASN][1000 genomes]
rs35385093	1.00[ASN][1000 genomes]
rs35825681	1.00[ASN][1000 genomes]
rs471714	1.00[ASN][1000 genomes]
rs472665	1.00[ASN][1000 genomes]
rs475178	1.00[ASN][1000 genomes]
rs475867	1.00[ASN][1000 genomes]
rs476877	1.00[ASN][1000 genomes]
rs553492	1.00[ASN][1000 genomes]
rs554338	1.00[ASN][1000 genomes]
rs55646454	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55831600	1.00[ASN][1000 genomes]
rs55895660	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56246162	1.00[ASN][1000 genomes]
rs56303695	1.00[ASN][1000 genomes]
rs56363339	1.00[ASN][1000 genomes]
rs56816645	1.00[EUR][1000 genomes]
rs580318	1.00[ASN][1000 genomes]
rs61897696	1.00[ASN][1000 genomes]
rs61897706	1.00[ASN][1000 genomes]
rs61899012	1.00[ASN][1000 genomes]
rs61899013	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899015	1.00[ASN][1000 genomes]
rs61899017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899023	0.85[EUR][1000 genomes]
rs61899037	1.00[ASN][1000 genomes]
rs61899038	1.00[ASN][1000 genomes]
rs61899043	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs628244	1.00[ASN][1000 genomes]
rs71484150	1.00[ASN][1000 genomes]
rs72994633	1.00[ASN][1000 genomes]
rs72994637	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964104	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1051760	chr11:119770181-119789683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv275318	chr11:119775811-119785360	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
2	chr11:119772600-119779800	Enhancers	Liver	Liver
3	chr11:119774200-119778400	Enhancers	Pancreas	Pancrea
4	chr11:119774400-119778800	Weak transcription	Brain Substantia Nigra	brain
5	chr11:119774600-119778400	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:119774600-119778400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:119775200-119780200	Enhancers	Placenta	Placenta
8	chr11:119775400-119780400	Weak transcription	Gastric	stomach
9	chr11:119775800-119781400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:119776200-119779200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:119776400-119778400	Active TSS	Small Intestine	intestine
12	chr11:119776600-119778800	Active TSS	Colonic Mucosa	Colon
13	chr11:119776800-119780000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:119777000-119779000	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr11:119777000-119779000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
16	chr11:119777000-119779600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:119777000-119779800	Enhancers	Fetal Lung	lung
18	chr11:119777000-119780000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:119777200-119778400	Enhancers	Left Ventricle	heart
20	chr11:119777200-119780000	Enhancers	Fetal Brain Male	brain
21	chr11:119777200-119782600	Enhancers	Fetal Heart	heart
22	chr11:119777400-119778400	Weak transcription	Fetal Brain Female	brain
23	chr11:119777400-119779400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr11:119777600-119778400	Enhancers	Right Ventricle	heart
25	chr11:119777600-119778400	Enhancers	Spleen	Spleen
26	chr11:119777600-119779800	Enhancers	Esophagus	oesophagus
27	chr11:119777600-119783000	Enhancers	Brain Angular Gyrus	brain
28	chr11:119777800-119778600	Bivalent Enhancer	HepG2	liver
29	chr11:119777800-119779000	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr11:119777800-119779400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr11:119777800-119779400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:119777800-119779600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr11:119777800-119779600	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr11:119777800-119781800	Enhancers	Brain Germinal Matrix	brain
35	chr11:119778000-119778400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
36	chr11:119778000-119778600	Flanking Active TSS	Stomach Mucosa	stomach
37	chr11:119778000-119778800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:119778000-119778800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
39	chr11:119778000-119779000	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr11:119778000-119779200	Enhancers	Lung	lung
41	chr11:119778000-119779400	Enhancers	H1 Cell Line	embryonic stem cell
42	chr11:119778000-119779400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr11:119778000-119779600	Bivalent Enhancer	Fetal Stomach	stomach
44	chr11:119778000-119779800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:119778000-119780000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:119778000-119780400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:119778200-119778400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:119778200-119778400	Flanking Active TSS	Fetal Intestine Small	intestine
49	chr11:119778200-119778600	Flanking Active TSS	Fetal Intestine Large	intestine
50	chr11:119778200-119778800	Enhancers	HUES48 Cell Line	embryonic stem cell

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