Variant report

Variant	rs61899023
Chromosome Location	chr11:119803362-119803363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119795854..119798838-chr11:119801167..119803457,2	K562	blood:
2	chr11:119802732..119804504-chr11:119807076..119809462,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11217573	0.82[EUR][1000 genomes]
rs11600005	0.88[EUR][1000 genomes]
rs11601034	0.82[EUR][1000 genomes]
rs17123461	0.85[EUR][1000 genomes]
rs17123466	0.85[EUR][1000 genomes]
rs36015387	0.99[ASN][1000 genomes]
rs471714	0.83[EUR][1000 genomes]
rs472665	0.83[EUR][1000 genomes]
rs475178	0.83[EUR][1000 genomes]
rs475867	0.83[EUR][1000 genomes]
rs476877	0.83[EUR][1000 genomes]
rs550764	0.83[EUR][1000 genomes]
rs553492	0.83[EUR][1000 genomes]
rs554338	0.83[EUR][1000 genomes]
rs55646454	0.85[EUR][1000 genomes]
rs55831600	0.83[EUR][1000 genomes]
rs55895660	0.85[EUR][1000 genomes]
rs56303695	0.88[EUR][1000 genomes]
rs56683142	0.99[ASN][1000 genomes]
rs56816645	0.85[EUR][1000 genomes]
rs580318	0.83[EUR][1000 genomes]
rs60280067	0.99[ASN][1000 genomes]
rs61899013	0.85[EUR][1000 genomes]
rs61899017	0.85[EUR][1000 genomes]
rs61899019	0.85[EUR][1000 genomes]
rs61899020	0.85[EUR][1000 genomes]
rs61899021	0.85[EUR][1000 genomes]
rs61899037	0.86[EUR][1000 genomes]
rs61899038	0.83[EUR][1000 genomes]
rs61899043	0.91[EUR][1000 genomes]
rs628244	0.83[EUR][1000 genomes]
rs657317	0.83[EUR][1000 genomes]
rs72994633	0.88[EUR][1000 genomes]
rs72994637	0.91[EUR][1000 genomes]
rs964104	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1049086	chr11:119782056-119808864	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119803000-119804000	Enhancers	Brain Germinal Matrix	brain
2	chr11:119803000-119804600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119803000-119804600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr11:119803000-119809000	Enhancers	Fetal Muscle Leg	muscle

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