Variant report
| Variant | rs657317 |
|---|---|
| Chromosome Location | chr11:119816766-119816767 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:119811657..119814267-chr11:119814807..119817757,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11217608 | 1.00[ASN][1000 genomes] |
| rs11600005 | 1.00[ASN][1000 genomes] |
| rs17123461 | 1.00[ASN][1000 genomes] |
| rs17123466 | 1.00[ASN][1000 genomes] |
| rs4403813 | 0.96[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs471714 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs472665 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs475178 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs475867 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs476877 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs550764 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs553492 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs554338 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55646454 | 1.00[ASN][1000 genomes] |
| rs55831600 | 1.00[EUR][1000 genomes] |
| rs55895660 | 1.00[ASN][1000 genomes] |
| rs56303695 | 0.94[EUR][1000 genomes] |
| rs56816645 | 1.00[ASN][1000 genomes] |
| rs580318 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61897867 | 1.00[ASN][1000 genomes] |
| rs61899023 | 0.83[EUR][1000 genomes] |
| rs61899037 | 0.97[EUR][1000 genomes] |
| rs61899038 | 1.00[EUR][1000 genomes] |
| rs61899043 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs628244 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7105596 | 1.00[ASN][1000 genomes] |
| rs72994633 | 0.94[EUR][1000 genomes] |
| rs72994637 | 0.91[EUR][1000 genomes] |
| rs72994672 | 1.00[ASN][1000 genomes] |
| rs7925677 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054057 | chr11:119781953-120519770 | Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv541178 | chr11:119781953-120519770 | Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 3 | nsv832285 | chr11:119789595-119957724 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:119813200-119823000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr11:119815200-119823000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 3 | chr11:119815600-119817000 | Weak transcription | H9 Cell Line | embryonic stem cell |
