Variant report

Variant	rs55895660
Chromosome Location	chr11:119774821-119774822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11217608	1.00[ASN][1000 genomes]
rs11600005	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123461	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123466	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403813	1.00[ASN][1000 genomes]
rs550764	1.00[ASN][1000 genomes]
rs55646454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56816645	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897867	1.00[ASN][1000 genomes]
rs61899013	1.00[EUR][1000 genomes]
rs61899017	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61899019	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61899020	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61899021	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61899023	0.85[EUR][1000 genomes]
rs61899043	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657317	1.00[ASN][1000 genomes]
rs7105596	1.00[ASN][1000 genomes]
rs72994637	0.82[EUR][1000 genomes]
rs72994672	1.00[ASN][1000 genomes]
rs7925677	1.00[ASN][1000 genomes]
rs964104	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051526	chr11:119750335-119775811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1051760	chr11:119770181-119789683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
2	chr11:119768000-119778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:119772600-119775800	Enhancers	Stomach Mucosa	stomach
4	chr11:119772600-119779800	Enhancers	Liver	Liver
5	chr11:119773200-119776000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr11:119773600-119775400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:119773600-119775400	Enhancers	Gastric	stomach
8	chr11:119773600-119776000	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr11:119773600-119776200	Enhancers	Fetal Intestine Large	intestine
10	chr11:119773600-119776200	Enhancers	Fetal Intestine Small	intestine
11	chr11:119773800-119775000	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:119773800-119776600	Enhancers	Esophagus	oesophagus
13	chr11:119774000-119775000	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:119774000-119775400	Enhancers	Colonic Mucosa	Colon
15	chr11:119774200-119775400	Weak transcription	Fetal Heart	heart
16	chr11:119774200-119778400	Enhancers	Pancreas	Pancrea
17	chr11:119774400-119775800	Enhancers	Brain Germinal Matrix	brain
18	chr11:119774400-119777600	Weak transcription	Brain Angular Gyrus	brain
19	chr11:119774400-119778800	Weak transcription	Brain Substantia Nigra	brain
20	chr11:119774600-119775000	Enhancers	Right Ventricle	heart
21	chr11:119774600-119776400	Enhancers	Small Intestine	intestine
22	chr11:119774600-119776600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr11:119774600-119776800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:119774600-119778400	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:119774600-119778400	Weak transcription	Brain Inferior Temporal Lobe	brain

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