Variant report

Variant	rs964104
Chromosome Location	chr11:119753972-119753973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11600005	0.97[EUR][1000 genomes]
rs11828081	1.00[AFR][1000 genomes]
rs17123461	1.00[EUR][1000 genomes]
rs17123466	1.00[EUR][1000 genomes]
rs55646454	1.00[EUR][1000 genomes]
rs55895660	1.00[EUR][1000 genomes]
rs56816645	1.00[EUR][1000 genomes]
rs61899013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61899017	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61899019	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61899020	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61899021	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61899023	0.85[EUR][1000 genomes]
rs61899043	0.82[EUR][1000 genomes]
rs72994637	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051526	chr11:119750335-119775811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119746000-119762400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119747200-119758600	Weak transcription	Right Ventricle	heart
3	chr11:119747200-119768200	Weak transcription	Fetal Intestine Small	intestine
4	chr11:119747600-119762400	Weak transcription	Esophagus	oesophagus
5	chr11:119749600-119760000	Enhancers	Fetal Heart	heart
6	chr11:119751200-119754800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:119751800-119756400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:119752000-119756400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:119753600-119758400	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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