Variant report

Variant	rs61899019
Chromosome Location	chr11:119774394-119774395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11217595	1.00[ASN][1000 genomes]
rs11600005	0.97[EUR][1000 genomes]
rs11607827	1.00[ASN][1000 genomes]
rs12793318	1.00[ASN][1000 genomes]
rs12808728	1.00[ASN][1000 genomes]
rs17123461	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17123466	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1815888	1.00[ASN][1000 genomes]
rs1815889	1.00[ASN][1000 genomes]
rs1815890	1.00[ASN][1000 genomes]
rs34004290	1.00[ASN][1000 genomes]
rs34071565	1.00[ASN][1000 genomes]
rs34518191	1.00[ASN][1000 genomes]
rs34699720	1.00[ASN][1000 genomes]
rs35095598	1.00[ASN][1000 genomes]
rs35163144	1.00[ASN][1000 genomes]
rs35385093	1.00[ASN][1000 genomes]
rs35825681	1.00[ASN][1000 genomes]
rs471714	1.00[ASN][1000 genomes]
rs472665	1.00[ASN][1000 genomes]
rs475178	1.00[ASN][1000 genomes]
rs475867	1.00[ASN][1000 genomes]
rs476877	1.00[ASN][1000 genomes]
rs553492	1.00[ASN][1000 genomes]
rs554338	1.00[ASN][1000 genomes]
rs55646454	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55831600	1.00[ASN][1000 genomes]
rs55895660	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56246162	1.00[ASN][1000 genomes]
rs56303695	1.00[ASN][1000 genomes]
rs56363339	1.00[ASN][1000 genomes]
rs56816645	1.00[EUR][1000 genomes]
rs580318	1.00[ASN][1000 genomes]
rs61897696	1.00[ASN][1000 genomes]
rs61897706	1.00[ASN][1000 genomes]
rs61899012	1.00[ASN][1000 genomes]
rs61899013	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899015	1.00[ASN][1000 genomes]
rs61899017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899023	0.85[EUR][1000 genomes]
rs61899037	1.00[ASN][1000 genomes]
rs61899038	1.00[ASN][1000 genomes]
rs61899043	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs628244	1.00[ASN][1000 genomes]
rs71484150	1.00[ASN][1000 genomes]
rs72994633	1.00[ASN][1000 genomes]
rs72994637	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964104	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051526	chr11:119750335-119775811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1051760	chr11:119770181-119789683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
2	chr11:119768000-119778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:119772600-119775800	Enhancers	Stomach Mucosa	stomach
4	chr11:119772600-119779800	Enhancers	Liver	Liver
5	chr11:119772800-119774400	Weak transcription	Brain Germinal Matrix	brain
6	chr11:119773200-119774600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:119773200-119776000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr11:119773400-119774400	Enhancers	Brain Angular Gyrus	brain
9	chr11:119773600-119774400	Enhancers	Brain Substantia Nigra	brain
10	chr11:119773600-119775400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:119773600-119775400	Enhancers	Gastric	stomach
12	chr11:119773600-119776000	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr11:119773600-119776200	Enhancers	Fetal Intestine Large	intestine
14	chr11:119773600-119776200	Enhancers	Fetal Intestine Small	intestine
15	chr11:119773800-119774600	Enhancers	Brain Hippocampus Middle	brain
16	chr11:119773800-119775000	Enhancers	Brain Cingulate Gyrus	brain
17	chr11:119773800-119776600	Enhancers	Esophagus	oesophagus
18	chr11:119774000-119774600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr11:119774000-119775000	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:119774000-119775400	Enhancers	Colonic Mucosa	Colon
21	chr11:119774200-119775400	Weak transcription	Fetal Heart	heart
22	chr11:119774200-119778400	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links