Variant report

Variant	rs61899043
Chromosome Location	chr11:119837947-119837948
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11217608	1.00[ASN][1000 genomes]
rs11600005	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123461	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123466	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403813	1.00[ASN][1000 genomes]
rs471714	0.91[EUR][1000 genomes]
rs472665	0.91[EUR][1000 genomes]
rs475178	0.91[EUR][1000 genomes]
rs475867	0.91[EUR][1000 genomes]
rs476877	0.91[EUR][1000 genomes]
rs550764	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs553492	0.91[EUR][1000 genomes]
rs554338	0.91[EUR][1000 genomes]
rs55646454	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831600	0.91[EUR][1000 genomes]
rs55895660	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56303695	0.97[EUR][1000 genomes]
rs56816645	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580318	0.91[EUR][1000 genomes]
rs61897867	1.00[ASN][1000 genomes]
rs61899013	0.82[EUR][1000 genomes]
rs61899017	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61899019	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61899020	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61899021	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61899023	0.91[EUR][1000 genomes]
rs61899037	0.89[EUR][1000 genomes]
rs61899038	0.91[EUR][1000 genomes]
rs628244	0.91[EUR][1000 genomes]
rs657317	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105596	1.00[ASN][1000 genomes]
rs72994633	0.97[EUR][1000 genomes]
rs72994637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72994672	1.00[ASN][1000 genomes]
rs7925677	1.00[ASN][1000 genomes]
rs964104	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119836200-119841200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:119836200-119841400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:119836200-119845600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:119836400-119841800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119837000-119841000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:119837400-119844200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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