Variant report

Variant	rs11217608
Chromosome Location	chr11:119849828-119849829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11600005	1.00[ASN][1000 genomes]
rs17123461	1.00[ASN][1000 genomes]
rs17123466	1.00[ASN][1000 genomes]
rs4403813	1.00[ASN][1000 genomes]
rs550764	1.00[ASN][1000 genomes]
rs55646454	1.00[ASN][1000 genomes]
rs55895660	1.00[ASN][1000 genomes]
rs56816645	1.00[ASN][1000 genomes]
rs61897867	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899043	1.00[ASN][1000 genomes]
rs657317	1.00[ASN][1000 genomes]
rs7105596	1.00[ASN][1000 genomes]
rs72994672	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925677	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119846200-119850400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:119846200-119853000	Enhancers	Fetal Intestine Large	intestine
3	chr11:119846400-119853000	Enhancers	Fetal Intestine Small	intestine
4	chr11:119846800-119853200	Weak transcription	Fetal Brain Female	brain
5	chr11:119846800-119858600	Weak transcription	Fetal Heart	heart
6	chr11:119847800-119851400	Weak transcription	Brain Germinal Matrix	brain
7	chr11:119847800-119853400	Weak transcription	Brain Anterior Caudate	brain
8	chr11:119848400-119853200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:119848400-119854200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:119849000-119850800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:119849200-119850000	Enhancers	Brain Hippocampus Middle	brain
12	chr11:119849200-119853200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:119849200-119853400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:119849800-119850400	Enhancers	Brain Substantia Nigra	brain
15	chr11:119849800-119850400	Flanking Active TSS	Duodenum Mucosa	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links