Variant report

Variant	rs11600005
Chromosome Location	chr11:119781758-119781759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119776418..119778910-chr11:119779204..119783369,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11217573	0.82[EUR][1000 genomes]
rs11217608	1.00[ASN][1000 genomes]
rs11601034	0.82[EUR][1000 genomes]
rs17123461	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123466	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403813	1.00[ASN][1000 genomes]
rs550764	1.00[ASN][1000 genomes]
rs55646454	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55895660	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56303695	0.83[EUR][1000 genomes]
rs56816645	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897867	1.00[ASN][1000 genomes]
rs61899013	0.97[EUR][1000 genomes]
rs61899017	0.97[EUR][1000 genomes]
rs61899019	0.97[EUR][1000 genomes]
rs61899020	0.97[EUR][1000 genomes]
rs61899021	0.97[EUR][1000 genomes]
rs61899023	0.88[EUR][1000 genomes]
rs61899037	0.81[EUR][1000 genomes]
rs61899043	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657317	1.00[ASN][1000 genomes]
rs7105596	1.00[ASN][1000 genomes]
rs72994633	0.83[EUR][1000 genomes]
rs72994637	0.86[EUR][1000 genomes]
rs72994672	1.00[ASN][1000 genomes]
rs7925677	1.00[ASN][1000 genomes]
rs964104	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1051760	chr11:119770181-119789683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv275318	chr11:119775811-119785360	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119777200-119782600	Enhancers	Fetal Heart	heart
2	chr11:119777600-119783000	Enhancers	Brain Angular Gyrus	brain
3	chr11:119777800-119781800	Enhancers	Brain Germinal Matrix	brain
4	chr11:119778200-119783200	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:119778400-119783000	Enhancers	Brain Hippocampus Middle	brain
6	chr11:119778400-119783000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:119778400-119783200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:119778600-119781800	Enhancers	Stomach Mucosa	stomach
9	chr11:119778600-119782200	Enhancers	Fetal Intestine Large	intestine
10	chr11:119778800-119782000	Enhancers	Brain Substantia Nigra	brain
11	chr11:119779400-119781800	Enhancers	Colonic Mucosa	Colon
12	chr11:119779400-119782000	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:119779400-119782000	Enhancers	Fetal Intestine Small	intestine
14	chr11:119779600-119781800	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr11:119779600-119781800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr11:119779600-119782800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:119779800-119784600	Weak transcription	Esophagus	oesophagus
18	chr11:119780000-119786800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:119780000-119792000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:119780400-119781800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr11:119780400-119782200	Enhancers	Gastric	stomach
22	chr11:119780400-119782800	Enhancers	Left Ventricle	heart
23	chr11:119780800-119782000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr11:119780800-119782000	Enhancers	Right Ventricle	heart
25	chr11:119781400-119782000	Enhancers	Fetal Muscle Leg	muscle
26	chr11:119781400-119782000	Enhancers	Psoas Muscle	Psoas

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