Variant report

Variant	rs475867
Chromosome Location	chr11:119818937-119818938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11217595	1.00[ASN][1000 genomes]
rs11607827	1.00[ASN][1000 genomes]
rs12793318	1.00[ASN][1000 genomes]
rs12808728	1.00[ASN][1000 genomes]
rs1815888	1.00[ASN][1000 genomes]
rs1815889	1.00[ASN][1000 genomes]
rs1815890	1.00[ASN][1000 genomes]
rs34004290	1.00[ASN][1000 genomes]
rs34071565	1.00[ASN][1000 genomes]
rs34518191	1.00[ASN][1000 genomes]
rs34699720	1.00[ASN][1000 genomes]
rs35095598	1.00[ASN][1000 genomes]
rs35163144	1.00[ASN][1000 genomes]
rs35385093	1.00[ASN][1000 genomes]
rs35825681	1.00[ASN][1000 genomes]
rs471714	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472665	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475178	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476877	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550764	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs553492	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554338	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56246162	1.00[ASN][1000 genomes]
rs56303695	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363339	1.00[ASN][1000 genomes]
rs580318	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897696	1.00[ASN][1000 genomes]
rs61897706	1.00[ASN][1000 genomes]
rs61899012	1.00[ASN][1000 genomes]
rs61899013	1.00[ASN][1000 genomes]
rs61899015	1.00[ASN][1000 genomes]
rs61899017	1.00[ASN][1000 genomes]
rs61899019	1.00[ASN][1000 genomes]
rs61899020	1.00[ASN][1000 genomes]
rs61899021	1.00[ASN][1000 genomes]
rs61899023	0.83[EUR][1000 genomes]
rs61899037	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899038	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899043	0.91[EUR][1000 genomes]
rs628244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657317	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71484150	1.00[ASN][1000 genomes]
rs72994633	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72994637	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119813200-119823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:119815200-119823000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119817200-119835600	Weak transcription	H9 Cell Line	embryonic stem cell

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