Variant report
| Variant | rs56252629 |
|---|---|
| Chromosome Location | chr6:150193596-150193597 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150182195..150187725-chr6:150188544..150196234,11 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000268592 | Chromatin interaction |
| ENSG00000120256 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs2343263 | 0.86[AFR][1000 genomes] |
| rs41424047 | 0.86[AFR][1000 genomes] |
| rs55734514 | 0.86[AFR][1000 genomes] |
| rs55956738 | 0.86[AFR][1000 genomes] |
| rs57679254 | 0.86[AFR][1000 genomes] |
| rs59644096 | 0.86[AFR][1000 genomes] |
| rs60539437 | 0.86[AFR][1000 genomes] |
| rs60596573 | 0.86[AFR][1000 genomes] |
| rs60619665 | 0.86[AFR][1000 genomes] |
| rs61370787 | 1.00[AFR][1000 genomes] |
| rs61666000 | 1.00[AFR][1000 genomes] |
| rs73779540 | 0.86[AFR][1000 genomes] |
| rs73779542 | 0.86[AFR][1000 genomes] |
| rs73779543 | 0.86[AFR][1000 genomes] |
| rs73779545 | 0.86[AFR][1000 genomes] |
| rs73779548 | 0.86[AFR][1000 genomes] |
| rs73779555 | 0.86[AFR][1000 genomes] |
| rs73779556 | 0.86[AFR][1000 genomes] |
| rs73779560 | 0.86[AFR][1000 genomes] |
| rs73779564 | 0.86[AFR][1000 genomes] |
| rs73779567 | 0.86[AFR][1000 genomes] |
| rs73779571 | 0.86[AFR][1000 genomes] |
| rs73779577 | 0.86[AFR][1000 genomes] |
| rs73782106 | 1.00[AFR][1000 genomes] |
| rs73782133 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886764 | chr6:150114745-150393683 | Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv517022 | chr6:150145001-150426272 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150186200-150194400 | Weak transcription | Pancreas | Pancrea |
