Variant report

Variant	rs60596573
Chromosome Location	chr6:149981654-149981655
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149981488..149983394-chr6:150012871..150015701,2	K562	blood:
2	chr6:149979522..149981707-chr6:150002661..150005407,2	K562	blood:
3	chr6:149969073..149971280-chr6:149979512..149981735,2	MCF-7	breast:
4	chr6:149969356..149971022-chr6:149980970..149983817,2	K562	blood:

Variant related genes	Relation type
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs2343263	1.00[AFR][1000 genomes]
rs41424047	1.00[AFR][1000 genomes]
rs55679019	1.00[AFR][1000 genomes]
rs55956738	1.00[AFR][1000 genomes]
rs56095145	1.00[AFR][1000 genomes]
rs56196636	0.86[AFR][1000 genomes]
rs56252629	0.86[AFR][1000 genomes]
rs56661428	1.00[AFR][1000 genomes]
rs57679254	1.00[AFR][1000 genomes]
rs58121840	0.86[AFR][1000 genomes]
rs58277211	1.00[AFR][1000 genomes]
rs58319496	0.86[AFR][1000 genomes]
rs58735783	1.00[AFR][1000 genomes]
rs58933940	1.00[AFR][1000 genomes]
rs59528999	1.00[AFR][1000 genomes]
rs59644096	1.00[AFR][1000 genomes]
rs60539437	1.00[AFR][1000 genomes]
rs60619665	1.00[AFR][1000 genomes]
rs60909651	1.00[AFR][1000 genomes]
rs61370787	0.86[AFR][1000 genomes]
rs61528805	1.00[AFR][1000 genomes]
rs61666000	0.86[AFR][1000 genomes]
rs73779509	1.00[AFR][1000 genomes]
rs73779511	1.00[AFR][1000 genomes]
rs73779512	1.00[AFR][1000 genomes]
rs73779515	1.00[AFR][1000 genomes]
rs73779534	1.00[AFR][1000 genomes]
rs73779537	1.00[AFR][1000 genomes]
rs73779540	1.00[AFR][1000 genomes]
rs73779542	1.00[AFR][1000 genomes]
rs73779543	1.00[AFR][1000 genomes]
rs73779545	1.00[AFR][1000 genomes]
rs73779548	1.00[AFR][1000 genomes]
rs73779555	1.00[AFR][1000 genomes]
rs73779556	1.00[AFR][1000 genomes]
rs73779560	1.00[AFR][1000 genomes]
rs73779564	1.00[AFR][1000 genomes]
rs73779567	1.00[AFR][1000 genomes]
rs73779571	1.00[AFR][1000 genomes]
rs73779573	0.86[AFR][1000 genomes]
rs73779577	1.00[AFR][1000 genomes]
rs73781237	1.00[AFR][1000 genomes]
rs73781239	1.00[AFR][1000 genomes]
rs73781243	1.00[AFR][1000 genomes]
rs73781249	0.86[AFR][1000 genomes]
rs73781250	1.00[AFR][1000 genomes]
rs73781251	1.00[AFR][1000 genomes]
rs73781252	1.00[AFR][1000 genomes]
rs73781278	1.00[AFR][1000 genomes]
rs73781279	1.00[AFR][1000 genomes]
rs73781280	1.00[AFR][1000 genomes]
rs73781281	0.86[AFR][1000 genomes]
rs73781282	1.00[AFR][1000 genomes]
rs73781283	1.00[AFR][1000 genomes]
rs73781284	1.00[AFR][1000 genomes]
rs73781287	1.00[AFR][1000 genomes]
rs73781288	1.00[AFR][1000 genomes]
rs73781290	1.00[AFR][1000 genomes]
rs73782106	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149970000-149983800	Weak transcription	Gastric	stomach
2	chr6:149970000-149989600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:149970200-149983000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:149970200-149985800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:149970200-149988200	Weak transcription	Aorta	Aorta
6	chr6:149970200-149989600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:149970200-149989600	Weak transcription	Small Intestine	intestine
8	chr6:149970200-149989800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:149970400-149982200	Weak transcription	NHDF-Ad	bronchial
10	chr6:149970400-149982600	Weak transcription	HUVEC	blood vessel
11	chr6:149970400-149982800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:149970400-149982800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:149970400-149982800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:149970400-149982800	Weak transcription	NHLF	lung
15	chr6:149970400-149983000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:149970400-149983000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:149970400-149983000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:149970400-149983000	Weak transcription	Psoas Muscle	Psoas
19	chr6:149970400-149983000	Weak transcription	A549	lung
20	chr6:149970400-149983800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:149970400-149983800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:149970400-149983800	Weak transcription	Fetal Stomach	stomach
23	chr6:149970400-149985600	Weak transcription	Colonic Mucosa	Colon
24	chr6:149970400-149986600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:149970400-149986600	Weak transcription	Hela-S3	cervix
26	chr6:149970400-149987600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:149970400-149989600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:149970400-149989600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:149970400-149992800	Weak transcription	Fetal Heart	heart
30	chr6:149970400-149996400	Weak transcription	Fetal Brain Male	brain
31	chr6:149970600-149982800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:149970600-149982800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:149970600-149982800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:149970600-149983000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:149970600-149983800	Weak transcription	Lung	lung
36	chr6:149970600-149983800	Weak transcription	Pancreas	Pancrea
37	chr6:149970600-149983800	Weak transcription	Spleen	Spleen
38	chr6:149970600-149984200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:149970600-149986000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr6:149970600-149986000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:149970600-149986200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:149970600-149989600	Weak transcription	Esophagus	oesophagus
43	chr6:149970600-149989600	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr6:149970800-149982200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:149970800-149982600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:149970800-149982800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:149970800-149982800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr6:149970800-149983000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:149970800-149983000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:149970800-149992400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links