Variant report

Variant	rs73781239
Chromosome Location	chr6:149901295-149901296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:149901277-149901519	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr6:149901205-149901402	A549	lung:	n/a	chr6:149901220-149901231
3	CEBPB	chr6:149901170-149901432	K562	blood:	n/a	chr6:149901220-149901231

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149900225..149903036-chr6:149911494..149915793,3	K562	blood:

Variant related genes	Relation type
ENSG00000237502	TF binding region
ENSG00000202343	Chromatin interaction
ENSG00000233330	Chromatin interaction
ENSG00000220848	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs2343263	1.00[AFR][1000 genomes]
rs55679019	1.00[AFR][1000 genomes]
rs56095145	1.00[AFR][1000 genomes]
rs56196636	0.86[AFR][1000 genomes]
rs56661428	1.00[AFR][1000 genomes]
rs57679254	1.00[AFR][1000 genomes]
rs58277211	1.00[AFR][1000 genomes]
rs58319496	0.86[AFR][1000 genomes]
rs58735783	1.00[AFR][1000 genomes]
rs58933940	1.00[AFR][1000 genomes]
rs59528999	1.00[AFR][1000 genomes]
rs60596573	1.00[AFR][1000 genomes]
rs60909651	1.00[AFR][1000 genomes]
rs61528805	1.00[AFR][1000 genomes]
rs73779509	1.00[AFR][1000 genomes]
rs73779511	1.00[AFR][1000 genomes]
rs73779512	1.00[AFR][1000 genomes]
rs73779515	1.00[AFR][1000 genomes]
rs73779534	1.00[AFR][1000 genomes]
rs73779537	1.00[AFR][1000 genomes]
rs73779540	1.00[AFR][1000 genomes]
rs73779542	1.00[AFR][1000 genomes]
rs73779543	1.00[AFR][1000 genomes]
rs73779545	1.00[AFR][1000 genomes]
rs73779548	1.00[AFR][1000 genomes]
rs73779555	1.00[AFR][1000 genomes]
rs73779556	1.00[AFR][1000 genomes]
rs73779560	1.00[AFR][1000 genomes]
rs73779564	1.00[AFR][1000 genomes]
rs73781237	1.00[AFR][1000 genomes]
rs73781243	1.00[AFR][1000 genomes]
rs73781249	0.86[AFR][1000 genomes]
rs73781250	1.00[AFR][1000 genomes]
rs73781251	1.00[AFR][1000 genomes]
rs73781252	1.00[AFR][1000 genomes]
rs73781278	1.00[AFR][1000 genomes]
rs73781279	1.00[AFR][1000 genomes]
rs73781280	1.00[AFR][1000 genomes]
rs73781281	0.86[AFR][1000 genomes]
rs73781282	1.00[AFR][1000 genomes]
rs73781283	1.00[AFR][1000 genomes]
rs73781284	1.00[AFR][1000 genomes]
rs73781287	1.00[AFR][1000 genomes]
rs73781288	1.00[AFR][1000 genomes]
rs73781290	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888400-149901600	Weak transcription	Aorta	Aorta
2	chr6:149888400-149902000	Weak transcription	Gastric	stomach
3	chr6:149888400-149911600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:149888600-149901400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:149888600-149901400	Weak transcription	Colonic Mucosa	Colon
6	chr6:149888600-149901600	Weak transcription	NH-A	brain
7	chr6:149888600-149905200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:149888600-149907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:149888600-149909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:149888600-149912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:149888800-149901400	Weak transcription	Fetal Brain Female	brain
13	chr6:149888800-149901600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:149888800-149901600	Weak transcription	NHLF	lung
15	chr6:149888800-149901800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:149888800-149904800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:149888800-149914800	Weak transcription	A549	lung
18	chr6:149889000-149901400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:149889000-149901600	Weak transcription	NHDF-Ad	bronchial
20	chr6:149889000-149902000	Weak transcription	Osteobl	bone
21	chr6:149889000-149905400	Weak transcription	HSMMtube	muscle
22	chr6:149889000-149908400	Weak transcription	Pancreas	Pancrea
23	chr6:149889000-149928000	Weak transcription	Stomach Mucosa	stomach
24	chr6:149889200-149919600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:149889400-149901600	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:149889400-149911800	Weak transcription	Psoas Muscle	Psoas
27	chr6:149889400-149924200	Weak transcription	Fetal Heart	heart
28	chr6:149889600-149914200	Weak transcription	Hela-S3	cervix
29	chr6:149889600-149931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:149891200-149911200	Weak transcription	Small Intestine	intestine
31	chr6:149892200-149901400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:149893800-149926600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:149894200-149901600	Weak transcription	HMEC	breast
34	chr6:149894200-149920000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:149894800-149901400	Weak transcription	HUVEC	blood vessel
36	chr6:149895000-149901400	Weak transcription	Fetal Brain Male	brain
37	chr6:149895600-149901400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:149895600-149923200	Strong transcription	Dnd41	blood
39	chr6:149895800-149904000	Strong transcription	GM12878-XiMat	blood
40	chr6:149896200-149903400	Strong transcription	Primary B cells from cord blood	blood
41	chr6:149896800-149901600	Weak transcription	K562	blood
42	chr6:149896800-149903400	Strong transcription	Primary hematopoietic stem cells	blood
43	chr6:149896800-149904400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:149897200-149902600	Weak transcription	Brain Hippocampus Middle	brain
45	chr6:149897200-149909400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:149897400-149901400	Weak transcription	Brain Angular Gyrus	brain
47	chr6:149897400-149901600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr6:149897400-149901600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr6:149897400-149909000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:149897600-149906800	Weak transcription	Brain Cingulate Gyrus	brain

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