Variant report

Variant	rs73779537
Chromosome Location	chr6:149967497-149967498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149958989..149961002-chr6:149965990..149968942,2	MCF-7	breast:
2	chr6:149920411..149922335-chr6:149967017..149969347,3	K562	blood:
3	chr6:149967496..149969831-chr6:150066064..150067785,2	K562	blood:
4	chr6:149915564..149918783-chr6:149966211..149969631,4	MCF-7	breast:
5	chr6:149967481..149969834-chr6:150184237..150185789,2	K562	blood:
6	chr6:149884132..149889842-chr6:149966518..149971305,10	K562	blood:
7	chr6:149967293..149971613-chr6:150037790..150041524,8	K562	blood:
8	chr6:149920411..149922335-chr6:149967017..149968903,2	K562	blood:
9	chr6:149907651..149911432-chr6:149965419..149969520,3	K562	blood:
10	chr6:149954650..149956610-chr6:149965636..149967604,2	K562	blood:
11	chr6:149894224..149896092-chr6:149966724..149969015,2	K562	blood:
12	chr6:149947351..149949049-chr6:149966233..149969059,2	K562	blood:
13	chr6:149965409..149968620-chr6:150010826..150012378,3	K562	blood:
14	chr6:149966762..149969361-chr6:170101954..170103751,2	K562	blood:
15	chr6:149966676..149970226-chr6:150037413..150039390,4	MCF-7	breast:
16	chr6:149891775..149893558-chr6:149966208..149969177,2	K562	blood:
17	chr6:149887084..149888200-chr6:149967090..149968152,3	MCF-7	breast:
18	chr6:149967309..149971944-chr6:150037502..150040952,6	MCF-7	breast:
19	chr6:149967338..149969733-chr6:150035421..150037591,2	K562	blood:
20	chr6:149950061..149951904-chr6:149964995..149967611,2	MCF-7	breast:
21	chr6:149884836..149889436-chr6:149966369..149971850,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000268592	Chromatin interaction
ENSG00000120253	Chromatin interaction
ENSG00000202343	Chromatin interaction
ENSG00000055211	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000184465	Chromatin interaction
ENSG00000120256	Chromatin interaction
ENSG00000185127	Chromatin interaction
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs2343263	1.00[AFR][1000 genomes]
rs55679019	1.00[AFR][1000 genomes]
rs55956738	1.00[AFR][1000 genomes]
rs56095145	1.00[AFR][1000 genomes]
rs56196636	0.86[AFR][1000 genomes]
rs56661428	1.00[AFR][1000 genomes]
rs57679254	1.00[AFR][1000 genomes]
rs58121840	0.86[AFR][1000 genomes]
rs58277211	1.00[AFR][1000 genomes]
rs58319496	0.86[AFR][1000 genomes]
rs58735783	1.00[AFR][1000 genomes]
rs58933940	1.00[AFR][1000 genomes]
rs59528999	1.00[AFR][1000 genomes]
rs59644096	1.00[AFR][1000 genomes]
rs60539437	1.00[AFR][1000 genomes]
rs60596573	1.00[AFR][1000 genomes]
rs60619665	1.00[AFR][1000 genomes]
rs60909651	1.00[AFR][1000 genomes]
rs61370787	0.86[AFR][1000 genomes]
rs61528805	1.00[AFR][1000 genomes]
rs73779509	1.00[AFR][1000 genomes]
rs73779511	1.00[AFR][1000 genomes]
rs73779512	1.00[AFR][1000 genomes]
rs73779515	1.00[AFR][1000 genomes]
rs73779534	1.00[AFR][1000 genomes]
rs73779540	1.00[AFR][1000 genomes]
rs73779542	1.00[AFR][1000 genomes]
rs73779543	1.00[AFR][1000 genomes]
rs73779545	1.00[AFR][1000 genomes]
rs73779548	1.00[AFR][1000 genomes]
rs73779555	1.00[AFR][1000 genomes]
rs73779556	1.00[AFR][1000 genomes]
rs73779560	1.00[AFR][1000 genomes]
rs73779564	1.00[AFR][1000 genomes]
rs73779567	1.00[AFR][1000 genomes]
rs73779571	1.00[AFR][1000 genomes]
rs73779573	0.86[AFR][1000 genomes]
rs73779577	1.00[AFR][1000 genomes]
rs73781237	1.00[AFR][1000 genomes]
rs73781239	1.00[AFR][1000 genomes]
rs73781243	1.00[AFR][1000 genomes]
rs73781249	0.86[AFR][1000 genomes]
rs73781250	1.00[AFR][1000 genomes]
rs73781251	1.00[AFR][1000 genomes]
rs73781252	1.00[AFR][1000 genomes]
rs73781278	1.00[AFR][1000 genomes]
rs73781279	1.00[AFR][1000 genomes]
rs73781280	1.00[AFR][1000 genomes]
rs73781281	0.86[AFR][1000 genomes]
rs73781282	1.00[AFR][1000 genomes]
rs73781283	1.00[AFR][1000 genomes]
rs73781284	1.00[AFR][1000 genomes]
rs73781287	1.00[AFR][1000 genomes]
rs73781288	1.00[AFR][1000 genomes]
rs73781290	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149915600-149968400	Weak transcription	Pancreas	Pancrea
2	chr6:149915600-149969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:149915800-149969200	Weak transcription	Gastric	stomach
4	chr6:149918800-149967600	Weak transcription	HUVEC	blood vessel
5	chr6:149918800-149967600	Weak transcription	NHLF	lung
6	chr6:149924800-149968000	Weak transcription	Fetal Kidney	kidney
7	chr6:149935200-149967800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:149935200-149968000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:149935200-149969000	Weak transcription	Small Intestine	intestine
10	chr6:149935400-149968000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:149935600-149968000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:149935600-149968400	Weak transcription	Esophagus	oesophagus
13	chr6:149935800-149968600	Weak transcription	Aorta	Aorta
14	chr6:149936000-149968000	Weak transcription	Right Ventricle	heart
15	chr6:149936800-149969000	Weak transcription	Lung	lung
16	chr6:149937400-149968000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:149941400-149967600	Weak transcription	Brain Substantia Nigra	brain
18	chr6:149941400-149967600	Weak transcription	Fetal Brain Male	brain
19	chr6:149941400-149968000	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:149942200-149967600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:149943400-149968000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:149944800-149969400	Weak transcription	Spleen	Spleen
23	chr6:149947000-149968200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:149949600-149967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:149950600-149968000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:149950600-149968000	Weak transcription	Brain Anterior Caudate	brain
27	chr6:149950600-149968400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:149950800-149968000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:149950800-149968200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:149951200-149968000	Weak transcription	HSMM	muscle
31	chr6:149952200-149967600	Weak transcription	Primary B cells from cord blood	blood
32	chr6:149952200-149968200	Weak transcription	Fetal Intestine Large	intestine
33	chr6:149952400-149967800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:149952600-149967600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:149954000-149968000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:149954000-149968200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:149956400-149967600	Weak transcription	Liver	Liver
38	chr6:149956400-149968000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:149956400-149968400	Weak transcription	Placenta	Placenta
40	chr6:149956800-149968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:149957200-149967800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:149958600-149967600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:149958600-149968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:149958600-149968000	Weak transcription	Fetal Intestine Small	intestine
45	chr6:149958600-149969200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:149959400-149968400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:149959600-149968000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:149959600-149968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:149959600-149968000	Weak transcription	Adipose Nuclei	Adipose
50	chr6:149959600-149968000	Weak transcription	Psoas Muscle	Psoas

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