Variant report

Variant	rs73781283
Chromosome Location	chr6:149934702-149934703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149927260..149929219-chr6:149933364..149935307,2	MCF-7	breast:
2	chr16:84500130..84500905-chr6:149934076..149935073,3	MCF-7	breast:
3	chr6:149934412..149936656-chr6:149968719..149970315,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs2343263	1.00[AFR][1000 genomes]
rs55679019	1.00[AFR][1000 genomes]
rs56095145	1.00[AFR][1000 genomes]
rs56196636	0.86[AFR][1000 genomes]
rs56661428	1.00[AFR][1000 genomes]
rs57679254	1.00[AFR][1000 genomes]
rs58121840	0.86[AFR][1000 genomes]
rs58277211	1.00[AFR][1000 genomes]
rs58319496	0.86[AFR][1000 genomes]
rs58735783	1.00[AFR][1000 genomes]
rs58933940	1.00[AFR][1000 genomes]
rs59528999	1.00[AFR][1000 genomes]
rs59644096	1.00[AFR][1000 genomes]
rs60539437	1.00[AFR][1000 genomes]
rs60596573	1.00[AFR][1000 genomes]
rs60619665	1.00[AFR][1000 genomes]
rs60909651	1.00[AFR][1000 genomes]
rs61528805	1.00[AFR][1000 genomes]
rs73779509	1.00[AFR][1000 genomes]
rs73779511	1.00[AFR][1000 genomes]
rs73779512	1.00[AFR][1000 genomes]
rs73779515	1.00[AFR][1000 genomes]
rs73779534	1.00[AFR][1000 genomes]
rs73779537	1.00[AFR][1000 genomes]
rs73779540	1.00[AFR][1000 genomes]
rs73779542	1.00[AFR][1000 genomes]
rs73779543	1.00[AFR][1000 genomes]
rs73779545	1.00[AFR][1000 genomes]
rs73779548	1.00[AFR][1000 genomes]
rs73779555	1.00[AFR][1000 genomes]
rs73779556	1.00[AFR][1000 genomes]
rs73779560	1.00[AFR][1000 genomes]
rs73779564	1.00[AFR][1000 genomes]
rs73779567	1.00[AFR][1000 genomes]
rs73779571	1.00[AFR][1000 genomes]
rs73779573	0.86[AFR][1000 genomes]
rs73779577	1.00[AFR][1000 genomes]
rs73781237	1.00[AFR][1000 genomes]
rs73781239	1.00[AFR][1000 genomes]
rs73781243	1.00[AFR][1000 genomes]
rs73781249	0.86[AFR][1000 genomes]
rs73781250	1.00[AFR][1000 genomes]
rs73781251	1.00[AFR][1000 genomes]
rs73781252	1.00[AFR][1000 genomes]
rs73781278	1.00[AFR][1000 genomes]
rs73781279	1.00[AFR][1000 genomes]
rs73781280	1.00[AFR][1000 genomes]
rs73781281	0.86[AFR][1000 genomes]
rs73781282	1.00[AFR][1000 genomes]
rs73781284	1.00[AFR][1000 genomes]
rs73781287	1.00[AFR][1000 genomes]
rs73781288	1.00[AFR][1000 genomes]
rs73781290	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1794633	chr6:149903597-149944908	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149909000-149935000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149910000-149935200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:149915200-149935000	Weak transcription	Small Intestine	intestine
4	chr6:149915600-149935200	Weak transcription	Esophagus	oesophagus
5	chr6:149915600-149968400	Weak transcription	Pancreas	Pancrea
6	chr6:149915600-149969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:149915800-149934800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:149915800-149969200	Weak transcription	Gastric	stomach
9	chr6:149916000-149935000	Weak transcription	Spleen	Spleen
10	chr6:149916000-149943000	Weak transcription	Colonic Mucosa	Colon
11	chr6:149916400-149950200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:149917600-149934800	Weak transcription	Psoas Muscle	Psoas
13	chr6:149918400-149935400	Weak transcription	HMEC	breast
14	chr6:149918400-149950200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:149918800-149934800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:149918800-149934800	Weak transcription	Brain Substantia Nigra	brain
17	chr6:149918800-149967600	Weak transcription	HUVEC	blood vessel
18	chr6:149918800-149967600	Weak transcription	NHLF	lung
19	chr6:149919000-149943000	Weak transcription	NHDF-Ad	bronchial
20	chr6:149919200-149935000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:149919400-149934800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:149919400-149940600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:149919400-149949000	Weak transcription	Osteobl	bone
24	chr6:149919600-149935000	Weak transcription	Lung	lung
25	chr6:149919800-149934800	Weak transcription	Ovary	ovary
26	chr6:149919800-149935000	Weak transcription	Aorta	Aorta
27	chr6:149920400-149940200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:149920800-149935000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:149920800-149935000	Weak transcription	Left Ventricle	heart
30	chr6:149921000-149944000	Weak transcription	HSMMtube	muscle
31	chr6:149922000-149934800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:149923000-149935000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:149923000-149941000	Weak transcription	HSMM	muscle
34	chr6:149923000-149943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:149923000-149952200	Weak transcription	NH-A	brain
36	chr6:149923200-149942800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:149923400-149935000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:149923400-149947600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:149924800-149934800	Weak transcription	Brain Angular Gyrus	brain
40	chr6:149924800-149934800	Weak transcription	Fetal Heart	heart
41	chr6:149924800-149941000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:149924800-149967400	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:149924800-149968000	Weak transcription	Fetal Kidney	kidney
44	chr6:149925000-149934800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:149925000-149935000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr6:149925000-149937000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:149925200-149934800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:149925200-149943400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr6:149925200-149967000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:149925600-149934800	Weak transcription	Stomach Smooth Muscle	stomach

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