Variant report

Variant	rs58121840
Chromosome Location	chr6:150144393-150144394
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150044766..150045296-chr6:150144284..150144787,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs2343263	0.86[AFR][1000 genomes]
rs41424047	0.86[AFR][1000 genomes]
rs55734514	0.86[AFR][1000 genomes]
rs55956738	0.86[AFR][1000 genomes]
rs56095145	0.86[AFR][1000 genomes]
rs56661428	0.86[AFR][1000 genomes]
rs57679254	0.86[AFR][1000 genomes]
rs58735783	0.86[AFR][1000 genomes]
rs58933940	0.86[AFR][1000 genomes]
rs59528999	0.86[AFR][1000 genomes]
rs59644096	0.86[AFR][1000 genomes]
rs60539437	0.86[AFR][1000 genomes]
rs60596573	0.86[AFR][1000 genomes]
rs60619665	0.86[AFR][1000 genomes]
rs60909651	0.86[AFR][1000 genomes]
rs61528805	0.86[AFR][1000 genomes]
rs73779509	0.86[AFR][1000 genomes]
rs73779511	0.86[AFR][1000 genomes]
rs73779512	0.86[AFR][1000 genomes]
rs73779515	0.86[AFR][1000 genomes]
rs73779534	0.86[AFR][1000 genomes]
rs73779537	0.86[AFR][1000 genomes]
rs73779540	0.86[AFR][1000 genomes]
rs73779542	0.86[AFR][1000 genomes]
rs73779543	0.86[AFR][1000 genomes]
rs73779545	0.86[AFR][1000 genomes]
rs73779548	0.86[AFR][1000 genomes]
rs73779555	0.86[AFR][1000 genomes]
rs73779556	0.86[AFR][1000 genomes]
rs73779560	0.86[AFR][1000 genomes]
rs73779564	0.86[AFR][1000 genomes]
rs73779567	0.86[AFR][1000 genomes]
rs73779571	0.86[AFR][1000 genomes]
rs73779573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779577	0.86[AFR][1000 genomes]
rs73781279	0.86[AFR][1000 genomes]
rs73781280	0.86[AFR][1000 genomes]
rs73781282	0.86[AFR][1000 genomes]
rs73781283	0.86[AFR][1000 genomes]
rs73781284	0.86[AFR][1000 genomes]
rs73781287	0.86[AFR][1000 genomes]
rs73781288	0.86[AFR][1000 genomes]
rs73781290	0.86[AFR][1000 genomes]
rs73782133	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
2	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
3	chr6:150087200-150154000	Weak transcription	Small Intestine	intestine
4	chr6:150088000-150160400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:150094400-150167200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:150112600-150167200	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:150116000-150151800	Weak transcription	NHLF	lung
9	chr6:150118800-150151400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:150119000-150144600	Weak transcription	Psoas Muscle	Psoas
11	chr6:150119000-150145600	Weak transcription	Pancreas	Pancrea
12	chr6:150119000-150146600	Weak transcription	Esophagus	oesophagus
13	chr6:150119000-150152600	Weak transcription	A549	lung
14	chr6:150119000-150164000	Weak transcription	Right Ventricle	heart
15	chr6:150119400-150146600	Weak transcription	NHEK	skin
16	chr6:150120000-150164600	Weak transcription	Fetal Kidney	kidney
17	chr6:150120400-150144400	Weak transcription	Spleen	Spleen
18	chr6:150122600-150144600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:150123600-150157000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:150123800-150155800	Weak transcription	NH-A	brain
21	chr6:150124000-150146600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:150124800-150151600	Weak transcription	Colonic Mucosa	Colon
23	chr6:150125200-150144600	Weak transcription	Ovary	ovary
24	chr6:150127800-150144400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:150128000-150157200	Weak transcription	Lung	lung
26	chr6:150132800-150144800	Weak transcription	Brain Substantia Nigra	brain
27	chr6:150132800-150146600	Weak transcription	NHDF-Ad	bronchial
28	chr6:150132800-150161800	Weak transcription	Fetal Lung	lung
29	chr6:150133000-150145800	Weak transcription	Brain Germinal Matrix	brain
30	chr6:150133000-150152000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:150133000-150152000	Weak transcription	HSMM	muscle
32	chr6:150133000-150157200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:150133200-150147000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:150133200-150161200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:150133200-150161800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:150133200-150162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:150133400-150144400	Weak transcription	Fetal Intestine Large	intestine
38	chr6:150133400-150144600	Weak transcription	Fetal Intestine Small	intestine
39	chr6:150134800-150144800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:150134800-150147000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:150134800-150155400	Weak transcription	Dnd41	blood
42	chr6:150135000-150161600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:150135600-150144800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:150139600-150144600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:150139600-150148000	Strong transcription	Placenta	Placenta
46	chr6:150140800-150149000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:150141200-150150600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:150141400-150144400	Weak transcription	Fetal Muscle Leg	muscle
49	chr6:150141400-150167200	Weak transcription	Right Atrium	heart
50	chr6:150142600-150147400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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