Variant report

Variant	rs73779511
Chromosome Location	chr6:149948855-149948856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149947741..149950535-chr6:149952808..149954570,2	MCF-7	breast:
2	chr6:149947351..149949049-chr6:149966233..149969059,2	K562	blood:
3	chr6:149946699..149949049-chr6:149967559..149970379,2	K562	blood:

Variant related genes	Relation type
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs2343263	1.00[AFR][1000 genomes]
rs55679019	1.00[AFR][1000 genomes]
rs55956738	1.00[AFR][1000 genomes]
rs56095145	1.00[AFR][1000 genomes]
rs56196636	0.86[AFR][1000 genomes]
rs56661428	1.00[AFR][1000 genomes]
rs57679254	1.00[AFR][1000 genomes]
rs58121840	0.86[AFR][1000 genomes]
rs58277211	1.00[AFR][1000 genomes]
rs58319496	0.86[AFR][1000 genomes]
rs58735783	1.00[AFR][1000 genomes]
rs58933940	1.00[AFR][1000 genomes]
rs59528999	1.00[AFR][1000 genomes]
rs59644096	1.00[AFR][1000 genomes]
rs60539437	1.00[AFR][1000 genomes]
rs60596573	1.00[AFR][1000 genomes]
rs60619665	1.00[AFR][1000 genomes]
rs60909651	1.00[AFR][1000 genomes]
rs61528805	1.00[AFR][1000 genomes]
rs73779509	1.00[AFR][1000 genomes]
rs73779512	1.00[AFR][1000 genomes]
rs73779515	1.00[AFR][1000 genomes]
rs73779534	1.00[AFR][1000 genomes]
rs73779537	1.00[AFR][1000 genomes]
rs73779540	1.00[AFR][1000 genomes]
rs73779542	1.00[AFR][1000 genomes]
rs73779543	1.00[AFR][1000 genomes]
rs73779545	1.00[AFR][1000 genomes]
rs73779548	1.00[AFR][1000 genomes]
rs73779555	1.00[AFR][1000 genomes]
rs73779556	1.00[AFR][1000 genomes]
rs73779560	1.00[AFR][1000 genomes]
rs73779564	1.00[AFR][1000 genomes]
rs73779567	1.00[AFR][1000 genomes]
rs73779571	1.00[AFR][1000 genomes]
rs73779573	0.86[AFR][1000 genomes]
rs73779577	1.00[AFR][1000 genomes]
rs73781237	1.00[AFR][1000 genomes]
rs73781239	1.00[AFR][1000 genomes]
rs73781243	1.00[AFR][1000 genomes]
rs73781249	0.86[AFR][1000 genomes]
rs73781250	1.00[AFR][1000 genomes]
rs73781251	1.00[AFR][1000 genomes]
rs73781252	1.00[AFR][1000 genomes]
rs73781278	1.00[AFR][1000 genomes]
rs73781279	1.00[AFR][1000 genomes]
rs73781280	1.00[AFR][1000 genomes]
rs73781281	0.86[AFR][1000 genomes]
rs73781282	1.00[AFR][1000 genomes]
rs73781283	1.00[AFR][1000 genomes]
rs73781284	1.00[AFR][1000 genomes]
rs73781287	1.00[AFR][1000 genomes]
rs73781288	1.00[AFR][1000 genomes]
rs73781290	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv3529123	chr6:149946209-149950607	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3529124	chr6:149946209-149950607	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3529122	chr6:149946259-149950757	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149915600-149968400	Weak transcription	Pancreas	Pancrea
2	chr6:149915600-149969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:149915800-149969200	Weak transcription	Gastric	stomach
4	chr6:149916400-149950200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:149918400-149950200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:149918800-149967600	Weak transcription	HUVEC	blood vessel
7	chr6:149918800-149967600	Weak transcription	NHLF	lung
8	chr6:149919400-149949000	Weak transcription	Osteobl	bone
9	chr6:149923000-149952200	Weak transcription	NH-A	brain
10	chr6:149924800-149967400	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:149924800-149968000	Weak transcription	Fetal Kidney	kidney
12	chr6:149925200-149967000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:149935000-149967000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:149935200-149959200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:149935200-149966200	Weak transcription	Hela-S3	cervix
16	chr6:149935200-149967800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:149935200-149968000	Weak transcription	Brain Angular Gyrus	brain
18	chr6:149935200-149969000	Weak transcription	Small Intestine	intestine
19	chr6:149935400-149958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:149935400-149968000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:149935600-149968000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:149935600-149968400	Weak transcription	Esophagus	oesophagus
23	chr6:149935800-149968600	Weak transcription	Aorta	Aorta
24	chr6:149936000-149967000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:149936000-149967200	Weak transcription	HMEC	breast
26	chr6:149936000-149968000	Weak transcription	Right Ventricle	heart
27	chr6:149936800-149969000	Weak transcription	Lung	lung
28	chr6:149937400-149968000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:149938400-149960800	Weak transcription	Fetal Heart	heart
30	chr6:149940000-149958400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:149940200-149954200	Strong transcription	Dnd41	blood
32	chr6:149940400-149950000	Strong transcription	Fetal Stomach	stomach
33	chr6:149941200-149956400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:149941400-149953600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:149941400-149967600	Weak transcription	Brain Substantia Nigra	brain
36	chr6:149941400-149967600	Weak transcription	Fetal Brain Male	brain
37	chr6:149941400-149968000	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:149942200-149950000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:149942200-149950000	Weak transcription	Fetal Lung	lung
40	chr6:149942200-149967600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr6:149942800-149954000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr6:149943200-149950000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:149943400-149968000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:149943600-149950200	Weak transcription	Fetal Brain Female	brain
45	chr6:149943800-149955400	Weak transcription	Colonic Mucosa	Colon
46	chr6:149944400-149950200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:149944600-149949000	Weak transcription	GM12878-XiMat	blood
48	chr6:149944600-149950200	Weak transcription	HepG2	liver
49	chr6:149944600-149951000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:149944600-149953000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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