Variant report

Variant	rs73779543
Chromosome Location	chr6:150012906-150012907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149981488..149983394-chr6:150012871..150015701,2	K562	blood:
2	chr6:149866598..149868157-chr6:150012877..150015678,2	K562	blood:
3	chr6:150012116..150014440-chr6:150030723..150032247,2	K562	blood:

Variant related genes	Relation type
ENSG00000131013	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs2343263	1.00[AFR][1000 genomes]
rs41424047	1.00[AFR][1000 genomes]
rs55679019	1.00[AFR][1000 genomes]
rs55956738	1.00[AFR][1000 genomes]
rs56095145	1.00[AFR][1000 genomes]
rs56196636	0.86[AFR][1000 genomes]
rs56252629	0.86[AFR][1000 genomes]
rs56661428	1.00[AFR][1000 genomes]
rs57679254	1.00[AFR][1000 genomes]
rs58121840	0.86[AFR][1000 genomes]
rs58277211	1.00[AFR][1000 genomes]
rs58319496	0.86[AFR][1000 genomes]
rs58735783	1.00[AFR][1000 genomes]
rs58933940	1.00[AFR][1000 genomes]
rs59528999	1.00[AFR][1000 genomes]
rs59644096	1.00[AFR][1000 genomes]
rs60539437	1.00[AFR][1000 genomes]
rs60596573	1.00[AFR][1000 genomes]
rs60619665	1.00[AFR][1000 genomes]
rs60909651	1.00[AFR][1000 genomes]
rs61370787	0.86[AFR][1000 genomes]
rs61528805	1.00[AFR][1000 genomes]
rs61666000	0.86[AFR][1000 genomes]
rs73779509	1.00[AFR][1000 genomes]
rs73779511	1.00[AFR][1000 genomes]
rs73779512	1.00[AFR][1000 genomes]
rs73779515	1.00[AFR][1000 genomes]
rs73779534	1.00[AFR][1000 genomes]
rs73779537	1.00[AFR][1000 genomes]
rs73779540	1.00[AFR][1000 genomes]
rs73779542	1.00[AFR][1000 genomes]
rs73779545	1.00[AFR][1000 genomes]
rs73779548	1.00[AFR][1000 genomes]
rs73779555	1.00[AFR][1000 genomes]
rs73779556	1.00[AFR][1000 genomes]
rs73779560	1.00[AFR][1000 genomes]
rs73779564	1.00[AFR][1000 genomes]
rs73779567	1.00[AFR][1000 genomes]
rs73779571	1.00[AFR][1000 genomes]
rs73779573	0.86[AFR][1000 genomes]
rs73779577	1.00[AFR][1000 genomes]
rs73781237	1.00[AFR][1000 genomes]
rs73781239	1.00[AFR][1000 genomes]
rs73781243	1.00[AFR][1000 genomes]
rs73781249	0.86[AFR][1000 genomes]
rs73781250	1.00[AFR][1000 genomes]
rs73781251	1.00[AFR][1000 genomes]
rs73781252	1.00[AFR][1000 genomes]
rs73781278	1.00[AFR][1000 genomes]
rs73781279	1.00[AFR][1000 genomes]
rs73781280	1.00[AFR][1000 genomes]
rs73781281	0.86[AFR][1000 genomes]
rs73781282	1.00[AFR][1000 genomes]
rs73781283	1.00[AFR][1000 genomes]
rs73781284	1.00[AFR][1000 genomes]
rs73781287	1.00[AFR][1000 genomes]
rs73781288	1.00[AFR][1000 genomes]
rs73781290	1.00[AFR][1000 genomes]
rs73782106	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149977200-150022600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149977800-150020600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:149978000-150029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:149980600-150024800	Strong transcription	Fetal Thymus	thymus
5	chr6:149981200-150018800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr6:149987000-150036800	Weak transcription	Hela-S3	cervix
7	chr6:149997800-150027400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:149998000-150020800	Weak transcription	Small Intestine	intestine
9	chr6:149998000-150029800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:150000000-150022000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:150004200-150017000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:150005400-150015200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:150005400-150016000	Weak transcription	Fetal Brain Male	brain
14	chr6:150005400-150021000	Weak transcription	Stomach Mucosa	stomach
15	chr6:150005400-150029800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:150005600-150013800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:150005600-150014000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:150005600-150014800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:150005600-150015400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:150005600-150016200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:150005600-150016400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:150005600-150018000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:150005600-150018200	Weak transcription	A549	lung
24	chr6:150005600-150023000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:150005600-150029600	Weak transcription	Aorta	Aorta
26	chr6:150005600-150030200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:150005600-150030200	Weak transcription	Fetal Heart	heart
28	chr6:150005600-150030400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:150005600-150030400	Weak transcription	HSMMtube	muscle
30	chr6:150005600-150037400	Weak transcription	Esophagus	oesophagus
31	chr6:150005600-150037800	Weak transcription	Gastric	stomach
32	chr6:150005800-150013000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:150005800-150013400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:150005800-150015200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:150005800-150015200	Weak transcription	HUVEC	blood vessel
36	chr6:150005800-150017800	Weak transcription	HMEC	breast
37	chr6:150005800-150018000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr6:150005800-150020800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:150005800-150027400	Weak transcription	Spleen	Spleen
40	chr6:150006000-150013200	Weak transcription	Osteobl	bone
41	chr6:150006600-150016800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:150006800-150013800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:150007200-150018200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr6:150007400-150023200	Strong transcription	Fetal Muscle Trunk	muscle
45	chr6:150007600-150014000	Weak transcription	Pancreas	Pancrea
46	chr6:150007800-150015400	Weak transcription	NHEK	skin
47	chr6:150007800-150022200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr6:150007800-150027400	Weak transcription	Right Ventricle	heart
49	chr6:150007800-150036800	Weak transcription	Brain Germinal Matrix	brain
50	chr6:150008000-150015400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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