Variant report

Variant	rs61370787
Chromosome Location	chr6:150190320-150190321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
LRP11	TF binding region
ENSG00000223701	Chromatin interaction
ENSG00000268592	Chromatin interaction
ENSG00000120256	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2343263	0.86[AFR][1000 genomes]
rs41424047	0.86[AFR][1000 genomes]
rs55734514	0.86[AFR][1000 genomes]
rs55956738	0.86[AFR][1000 genomes]
rs56252629	1.00[AFR][1000 genomes]
rs56661428	0.86[AFR][1000 genomes]
rs57679254	0.86[AFR][1000 genomes]
rs59644096	0.86[AFR][1000 genomes]
rs60539437	0.86[AFR][1000 genomes]
rs60596573	0.86[AFR][1000 genomes]
rs60619665	0.86[AFR][1000 genomes]
rs61666000	1.00[AFR][1000 genomes]
rs73779537	0.86[AFR][1000 genomes]
rs73779540	0.86[AFR][1000 genomes]
rs73779542	0.86[AFR][1000 genomes]
rs73779543	0.86[AFR][1000 genomes]
rs73779545	0.86[AFR][1000 genomes]
rs73779548	0.86[AFR][1000 genomes]
rs73779555	0.86[AFR][1000 genomes]
rs73779556	0.86[AFR][1000 genomes]
rs73779560	0.86[AFR][1000 genomes]
rs73779564	0.86[AFR][1000 genomes]
rs73779567	0.86[AFR][1000 genomes]
rs73779571	0.86[AFR][1000 genomes]
rs73779577	0.86[AFR][1000 genomes]
rs73782106	1.00[AFR][1000 genomes]
rs73782133	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150186200-150194400	Weak transcription	Pancreas	Pancrea
2	chr6:150188800-150190400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:150189000-150190400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:150189000-150190400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:150189000-150190400	Enhancers	Hela-S3	cervix
6	chr6:150189200-150190400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:150189400-150191000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:150189600-150190800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:150189800-150190600	Enhancers	K562	blood
10	chr6:150189800-150191200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:150190000-150190400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:150190000-150190400	Bivalent Enhancer	HepG2	liver
13	chr6:150190000-150191400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:150190200-150191600	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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