Variant report
| Variant | rs56260024 |
|---|---|
| Chromosome Location | chr5:43981986-43981987 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs4256351 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4526111 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55729179 | 1.00[EUR][1000 genomes] |
| rs55742498 | 0.81[EUR][1000 genomes] |
| rs56310009 | 1.00[EUR][1000 genomes] |
| rs6451738 | 0.93[EUR][1000 genomes] |
| rs6451739 | 0.91[EUR][1000 genomes] |
| rs72748143 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72748153 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72748154 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72748156 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72748159 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72748163 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72748164 | 1.00[EUR][1000 genomes] |
| rs72748168 | 1.00[EUR][1000 genomes] |
| rs72748169 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72748178 | 1.00[EUR][1000 genomes] |
| rs72748187 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72748197 | 1.00[EUR][1000 genomes] |
| rs72748198 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72748200 | 1.00[EUR][1000 genomes] |
| rs72750162 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72750165 | 1.00[EUR][1000 genomes] |
| rs72750171 | 0.97[EUR][1000 genomes] |
| rs72764223 | 0.87[EUR][1000 genomes] |
| rs72764224 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72764226 | 0.81[EUR][1000 genomes] |
| rs72764227 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2830374 | chr5:43785548-44341631 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1019047 | chr5:43939693-44301657 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830276 | chr5:43951430-44150855 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:43981200-43982000 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr5:43981400-43982200 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
