Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs4256351	0.81[EUR][1000 genomes]
rs4526111	0.81[EUR][1000 genomes]
rs55729179	0.81[EUR][1000 genomes]
rs55742498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56260024	0.81[EUR][1000 genomes]
rs56310009	0.81[EUR][1000 genomes]
rs6451738	0.87[EUR][1000 genomes]
rs6451739	0.85[EUR][1000 genomes]
rs72748143	0.87[EUR][1000 genomes]
rs72748153	0.81[EUR][1000 genomes]
rs72748154	0.81[EUR][1000 genomes]
rs72748156	0.81[EUR][1000 genomes]
rs72748159	0.81[EUR][1000 genomes]
rs72748163	0.81[EUR][1000 genomes]
rs72748164	0.81[EUR][1000 genomes]
rs72748168	0.81[EUR][1000 genomes]
rs72748169	0.81[EUR][1000 genomes]
rs72748178	0.81[EUR][1000 genomes]
rs72748187	0.81[EUR][1000 genomes]
rs72748197	0.81[EUR][1000 genomes]
rs72748198	0.81[EUR][1000 genomes]
rs72748200	0.81[EUR][1000 genomes]
rs72750165	0.81[EUR][1000 genomes]
rs72764223	0.93[EUR][1000 genomes]
rs72764224	0.93[EUR][1000 genomes]
rs72764227	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43951000-43951600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: