Variant report

Variant	rs72764223
Chromosome Location	chr5:43947925-43947926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs4256351	0.87[EUR][1000 genomes]
rs4526111	0.87[EUR][1000 genomes]
rs55729179	0.87[EUR][1000 genomes]
rs55742498	0.93[EUR][1000 genomes]
rs56260024	0.87[EUR][1000 genomes]
rs56310009	0.87[EUR][1000 genomes]
rs6451738	0.81[EUR][1000 genomes]
rs72748143	0.93[EUR][1000 genomes]
rs72748153	0.87[EUR][1000 genomes]
rs72748154	0.87[EUR][1000 genomes]
rs72748156	0.87[EUR][1000 genomes]
rs72748159	0.87[EUR][1000 genomes]
rs72748163	0.87[EUR][1000 genomes]
rs72748164	0.87[EUR][1000 genomes]
rs72748168	0.87[EUR][1000 genomes]
rs72748169	0.87[EUR][1000 genomes]
rs72748178	0.87[EUR][1000 genomes]
rs72748187	0.87[EUR][1000 genomes]
rs72748197	0.87[EUR][1000 genomes]
rs72748198	0.87[EUR][1000 genomes]
rs72748200	0.87[EUR][1000 genomes]
rs72750165	0.87[EUR][1000 genomes]
rs72750171	0.83[EUR][1000 genomes]
rs72764224	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72764226	0.93[EUR][1000 genomes]
rs72764227	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv969953	chr5:43943510-43949010	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43947400-43948000	Enhancers	Fetal Lung	lung
2	chr5:43947400-43949200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:43947600-43949200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:43947800-43948200	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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