Variant report

Variant	rs72748197
Chromosome Location	chr5:44026561-44026562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs4256351	1.00[EUR][1000 genomes]
rs4526111	1.00[EUR][1000 genomes]
rs55729179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55742498	0.81[EUR][1000 genomes]
rs56260024	1.00[EUR][1000 genomes]
rs56310009	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451738	0.93[EUR][1000 genomes]
rs6451739	0.91[EUR][1000 genomes]
rs72748143	0.93[EUR][1000 genomes]
rs72748153	1.00[EUR][1000 genomes]
rs72748154	1.00[EUR][1000 genomes]
rs72748156	1.00[EUR][1000 genomes]
rs72748159	1.00[EUR][1000 genomes]
rs72748163	1.00[EUR][1000 genomes]
rs72748164	1.00[EUR][1000 genomes]
rs72748168	1.00[EUR][1000 genomes]
rs72748169	1.00[EUR][1000 genomes]
rs72748178	1.00[EUR][1000 genomes]
rs72748187	1.00[EUR][1000 genomes]
rs72748198	1.00[EUR][1000 genomes]
rs72748200	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72750162	0.91[EUR][1000 genomes]
rs72750165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72750171	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72764223	0.87[EUR][1000 genomes]
rs72764224	0.87[EUR][1000 genomes]
rs72764226	0.81[EUR][1000 genomes]
rs72764227	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830276	chr5:43951430-44150855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44023000-44035600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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