Variant report

Variant	rs56262432
Chromosome Location	chr7:108224580-108224581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2240450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2286259	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55963129	0.81[AFR][1000 genomes]
rs57046095	0.82[AFR][1000 genomes]
rs58052113	0.81[AFR][1000 genomes]
rs59908458	0.81[AFR][1000 genomes]
rs60598865	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6945432	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6977190	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73426137	0.82[ASN][1000 genomes]
rs73713149	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73713159	0.81[AFR][1000 genomes]
rs73713163	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73713164	0.81[AFR][1000 genomes]
rs73713165	0.81[AFR][1000 genomes]
rs73713166	0.81[AFR][1000 genomes]
rs73713171	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7802157	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3333624	chr7:108224566-108226814	Weak transcription Enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108214400-108225000	Weak transcription	Fetal Brain Male	brain
2	chr7:108216200-108224600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:108216400-108229400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:108216800-108224600	Weak transcription	NHEK	skin
5	chr7:108220600-108224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:108221000-108224600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:108221000-108229000	Weak transcription	Right Ventricle	heart
8	chr7:108221200-108226200	Weak transcription	Right Atrium	heart
9	chr7:108221200-108229200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:108222200-108225000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:108223000-108224600	Weak transcription	HMEC	breast
12	chr7:108223000-108225000	Weak transcription	Fetal Heart	heart
13	chr7:108223000-108233200	Weak transcription	Small Intestine	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links