Variant report

Variant	rs73713163
Chromosome Location	chr7:108222611-108222612
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108214879..108218601-chr7:108220209..108223552,3	MCF-7	breast:
2	chr7:108208678..108213209-chr7:108221892..108226681,7	MCF-7	breast:
3	chr7:108221854..108223398-chr7:108224330..108226111,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128590	Chromatin interaction
ENSG00000135241	Chromatin interaction
ENSG00000177683	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2240450	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286259	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56262432	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60598865	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945432	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6977190	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73426137	0.90[ASN][1000 genomes]
rs73713149	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713171	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802157	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108214400-108225000	Weak transcription	Fetal Brain Male	brain
2	chr7:108216200-108223000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:108216200-108224600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:108216400-108229400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:108216800-108224600	Weak transcription	NHEK	skin
6	chr7:108220400-108222800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:108220600-108223200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:108220600-108224800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:108221000-108222800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:108221000-108223800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:108221000-108224600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:108221000-108229000	Weak transcription	Right Ventricle	heart
13	chr7:108221200-108222800	Weak transcription	Pancreas	Pancrea
14	chr7:108221200-108223000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:108221200-108226200	Weak transcription	Right Atrium	heart
16	chr7:108221200-108229200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:108221600-108223200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr7:108221800-108223000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr7:108222000-108222800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr7:108222000-108223200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:108222000-108223200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:108222200-108222800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:108222200-108223000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr7:108222200-108223000	Enhancers	HMEC	breast
25	chr7:108222200-108223200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:108222200-108223200	Enhancers	Adipose Nuclei	Adipose
27	chr7:108222200-108223200	Enhancers	Fetal Intestine Large	intestine
28	chr7:108222200-108223200	Enhancers	HSMMtube	muscle
29	chr7:108222200-108225000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr7:108222400-108222800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:108222400-108222800	Flanking Active TSS	Fetal Kidney	kidney
32	chr7:108222400-108222800	Flanking Active TSS	HepG2	liver
33	chr7:108222400-108223000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr7:108222400-108223000	Enhancers	Fetal Heart	heart
35	chr7:108222400-108223000	Enhancers	Placenta Amnion	Placenta Amnion
36	chr7:108222400-108223200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr7:108222400-108223200	Enhancers	Fetal Intestine Small	intestine
38	chr7:108222600-108222800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr7:108222600-108222800	Enhancers	Muscle Satellite Cultured Cells	--
40	chr7:108222600-108222800	Enhancers	Gastric	stomach
41	chr7:108222600-108223000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:108222600-108223000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr7:108222600-108223000	Enhancers	Placenta	Placenta
44	chr7:108222600-108223000	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr7:108222600-108223000	Enhancers	Small Intestine	intestine
46	chr7:108222600-108223000	Enhancers	HSMM	muscle
47	chr7:108222600-108223200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:108222600-108223200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:108222600-108223200	Enhancers	H9 Cell Line	embryonic stem cell
50	chr7:108222600-108223200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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