Variant report
| Variant | rs6977190 |
|---|---|
| Chromosome Location | chr7:108180005-108180006 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:108164488..108174629-chr7:108175608..108181939,14 | K562 | blood: | |
| 2 | chr7:108178264..108181237-chr7:108188016..108189662,2 | MCF-7 | breast: | |
| 3 | chr7:108175375..108182018-chr7:108207477..108213332,11 | K562 | blood: | |
| 4 | chr7:108174082..108182018-chr7:108207303..108212626,11 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135241 | Chromatin interaction |
| ENSG00000177683 | Chromatin interaction |
| ENSG00000128590 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs2240450 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2286259 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56010627 | 0.82[AFR][1000 genomes] |
| rs56262432 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs60598865 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6945432 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6955463 | 0.82[AFR][1000 genomes] |
| rs73426137 | 0.90[ASN][1000 genomes] |
| rs73713149 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73713163 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73713171 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7802157 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3348839 | chr7:107377311-108286538 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 91 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
