Variant report

Variant	rs6945432
Chromosome Location	chr7:108175455-108175456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108174829..108177783-chr7:108186368..108189092,2	K562	blood:
2	chr7:108172423..108174629-chr7:108175217..108177443,4	K562	blood:
3	chr7:108175375..108182018-chr7:108207477..108213332,11	K562	blood:
4	chr7:108163986..108165918-chr7:108175176..108176794,2	MCF-7	breast:
5	chr7:108174082..108182018-chr7:108207303..108212626,11	K562	blood:
6	chr7:108175205..108176864-chr7:108190945..108193646,2	K562	blood:
7	chr7:108175296..108178679-chr7:108201125..108203447,3	K562	blood:
8	chr7:108173587..108175885-chr7:108209615..108211951,2	MCF-7	breast:
9	chr7:108163188..108164833-chr7:108174026..108175540,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2240450	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2286259	0.90[ASN][1000 genomes]
rs56262432	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56823224	0.92[EUR][1000 genomes]
rs60598865	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6977190	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73426137	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713149	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73713163	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73713171	0.90[ASN][1000 genomes]
rs7802157	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	esv275106	chr7:108173123-108179506	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108167600-108176200	Weak transcription	Primary B cells from cord blood	blood
2	chr7:108168800-108175800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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