Variant report

Variant	rs56294550
Chromosome Location	chr11:72621580-72621581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55633850	1.00[AMR][1000 genomes]
rs55651216	1.00[AMR][1000 genomes]
rs55806368	1.00[AMR][1000 genomes]
rs55822003	1.00[AMR][1000 genomes]
rs55970824	1.00[AMR][1000 genomes]
rs56088156	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7105097	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72577200-72651600	Weak transcription	Gastric	stomach
2	chr11:72582600-72622000	Weak transcription	Fetal Heart	heart
3	chr11:72597200-72634200	Weak transcription	NHLF	lung
4	chr11:72599400-72632400	Weak transcription	HUVEC	blood vessel
5	chr11:72600800-72623600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:72600800-72632600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:72600800-72653200	Weak transcription	Lung	lung
8	chr11:72601000-72624000	Weak transcription	Thymus	Thymus
9	chr11:72601000-72636800	Weak transcription	Spleen	Spleen
10	chr11:72601000-72641200	Weak transcription	HSMMtube	muscle
11	chr11:72601200-72622800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:72601200-72623200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:72601200-72623600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr11:72601200-72636000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:72601400-72632400	Weak transcription	Ovary	ovary
16	chr11:72601800-72636000	Weak transcription	Osteobl	bone
17	chr11:72602200-72636800	Weak transcription	Left Ventricle	heart
18	chr11:72605600-72624000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:72607000-72643000	Weak transcription	HSMM	muscle
20	chr11:72608800-72623600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:72611600-72622400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:72611800-72623000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:72612400-72649000	Weak transcription	Aorta	Aorta
24	chr11:72614200-72640400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:72615000-72622200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:72615800-72631400	Weak transcription	Liver	Liver
27	chr11:72616200-72623200	Weak transcription	HepG2	liver
28	chr11:72618200-72623800	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:72618400-72636000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:72619600-72641400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:72620000-72622200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:72620000-72622400	Weak transcription	Primary B cells from cord blood	blood
33	chr11:72620200-72636800	Weak transcription	Right Atrium	heart
34	chr11:72620800-72622000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:72621000-72651000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:72621200-72622200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr11:72621400-72621600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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