Variant report

Variant	rs55651216
Chromosome Location	chr11:72385848-72385849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
PDE2A	TF binding region
ENSG00000255808	Chromatin interaction
ENSG00000186642	Chromatin interaction
ENSG00000214530	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55806368	1.00[AMR][1000 genomes]
rs55822003	1.00[AMR][1000 genomes]
rs55970824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56088156	1.00[AMR][1000 genomes]
rs56204271	0.83[AFR][1000 genomes]
rs56294550	1.00[AMR][1000 genomes]
rs58387586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61139682	1.00[AMR][1000 genomes]
rs7105097	1.00[AMR][1000 genomes]
rs7110892	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv1832864	chr11:72270965-72389125	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
4	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72380600-72395400	Weak transcription	Right Atrium	heart
2	chr11:72385000-72386200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:72385200-72387800	Enhancers	Fetal Brain Male	brain
4	chr11:72385400-72386200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr11:72385400-72386400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
6	chr11:72385400-72386400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:72385400-72388400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:72385400-72388600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:72385400-72394600	Weak transcription	Gastric	stomach
10	chr11:72385600-72386000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr11:72385600-72386200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:72385600-72386200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
13	chr11:72385600-72386200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
14	chr11:72385800-72386000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:72385800-72386200	Flanking Active TSS	Fetal Brain Female	brain
16	chr11:72385800-72386400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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