Variant report

Variant	rs55806368
Chromosome Location	chr11:72479904-72479905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72478740..72480809-chr11:73389809..73392340,2	MCF-7	breast:
2	chr11:72477164..72479305-chr11:72479597..72481837,2	MCF-7	breast:
3	chr11:72479449..72484784-chr11:72523025..72526806,6	MCF-7	breast:
4	chr11:72479006..72480656-chr11:72483833..72486270,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168010	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55651216	1.00[AMR][1000 genomes]
rs55822003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55970824	1.00[AMR][1000 genomes]
rs56088156	1.00[AMR][1000 genomes]
rs56294550	1.00[AMR][1000 genomes]
rs58387586	1.00[AMR][1000 genomes]
rs61139682	1.00[AMR][1000 genomes]
rs7105097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv825992	chr11:72476174-72524295	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72464400-72483600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:72464400-72491400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:72464600-72492000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:72464800-72483200	Weak transcription	Fetal Thymus	thymus
5	chr11:72470000-72491400	Weak transcription	Aorta	Aorta
6	chr11:72470200-72482600	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:72470400-72482000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:72470400-72482200	Weak transcription	Brain Angular Gyrus	brain
9	chr11:72470400-72482200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:72470400-72486800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:72470400-72491000	Weak transcription	Brain Germinal Matrix	brain
12	chr11:72470600-72492000	Weak transcription	Primary T cells from cord blood	blood
13	chr11:72470800-72481800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:72470800-72482800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:72470800-72483600	Weak transcription	Fetal Lung	lung
16	chr11:72470800-72483600	Weak transcription	Right Atrium	heart
17	chr11:72470800-72484200	Weak transcription	Fetal Brain Female	brain
18	chr11:72470800-72484400	Weak transcription	Ovary	ovary
19	chr11:72471000-72482400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:72471000-72482400	Weak transcription	K562	blood
21	chr11:72472200-72481200	Genic enhancers	Fetal Intestine Small	intestine
22	chr11:72472200-72482200	Weak transcription	Brain Anterior Caudate	brain
23	chr11:72472200-72484400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:72472800-72482200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:72473600-72480200	Genic enhancers	Fetal Intestine Large	intestine
26	chr11:72474200-72483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:72474200-72483200	Weak transcription	Left Ventricle	heart
28	chr11:72474200-72491400	Weak transcription	Primary B cells from cord blood	blood
29	chr11:72474400-72482400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:72474600-72484200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:72474600-72490600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:72474800-72480400	Strong transcription	Fetal Stomach	stomach
33	chr11:72474800-72484200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:72475000-72487000	Weak transcription	Spleen	Spleen
35	chr11:72475200-72481600	Enhancers	Liver	Liver
36	chr11:72475400-72491000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr11:72475600-72481600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:72475600-72482400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr11:72475600-72482800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:72475800-72481600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:72476000-72487000	Weak transcription	Lung	lung
42	chr11:72477200-72480200	Genic enhancers	Gastric	stomach
43	chr11:72477200-72480400	Enhancers	Stomach Mucosa	stomach
44	chr11:72477600-72480200	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr11:72478000-72482200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr11:72478200-72482200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:72478400-72480000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:72478600-72480000	Enhancers	Placenta	Placenta
49	chr11:72478600-72482200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr11:72478800-72480000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links