Variant report

Variant	rs61139682
Chromosome Location	chr11:72341739-72341740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72341497..72343932-chr11:72350783..72352444,2	K562	blood:
2	chr11:72339617..72343114-chr11:72344003..72346053,4	K562	blood:
3	chr11:72303390..72305679-chr11:72341481..72343396,2	K562	blood:
4	chr11:72334834..72339078-chr11:72340923..72346253,6	K562	blood:
5	chr11:72340095..72342278-chr11:72348258..72351014,2	MCF-7	breast:
6	chr11:72321045..72323854-chr11:72340699..72343138,2	K562	blood:
7	chr11:72341496..72343582-chr11:72364594..72367336,2	MCF-7	breast:
8	chr11:72336037..72338838-chr11:72339942..72342746,4	K562	blood:
9	chr11:72340350..72342002-chr11:72346952..72349223,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000186642	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55651216	1.00[AMR][1000 genomes]
rs55806368	1.00[AMR][1000 genomes]
rs55822003	1.00[AMR][1000 genomes]
rs55970824	1.00[AMR][1000 genomes]
rs56088156	1.00[AMR][1000 genomes]
rs58387586	1.00[AMR][1000 genomes]
rs7105097	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv1832864	chr11:72270965-72389125	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
4	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1042182	chr11:72294042-72348491	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv825991	chr11:72320642-72385221	Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
7	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
8	esv1793754	chr11:72335673-72348106	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72334800-72350200	Enhancers	Left Ventricle	heart
2	chr11:72335400-72346600	Enhancers	Brain Angular Gyrus	brain
3	chr11:72335600-72344600	Enhancers	Rectal Smooth Muscle	rectum
4	chr11:72335600-72349400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr11:72335800-72342600	Enhancers	Fetal Muscle Trunk	muscle
6	chr11:72335800-72349000	Enhancers	Fetal Brain Male	brain
7	chr11:72335800-72350600	Enhancers	Brain Hippocampus Middle	brain
8	chr11:72336000-72345000	Enhancers	Fetal Muscle Leg	muscle
9	chr11:72336000-72350400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:72336400-72343200	Enhancers	Brain Germinal Matrix	brain
11	chr11:72337400-72342400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:72337400-72342800	Weak transcription	Pancreas	Pancrea
13	chr11:72337600-72342200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:72337600-72343000	Weak transcription	Liver	Liver
15	chr11:72337800-72342400	Weak transcription	Fetal Heart	heart
16	chr11:72337800-72348200	Weak transcription	Gastric	stomach
17	chr11:72338200-72342400	Weak transcription	K562	blood
18	chr11:72338200-72342600	Weak transcription	Fetal Intestine Large	intestine
19	chr11:72338400-72342200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:72338400-72342600	Weak transcription	Colonic Mucosa	Colon
21	chr11:72338400-72342600	Weak transcription	HUVEC	blood vessel
22	chr11:72338400-72348200	Weak transcription	Ovary	ovary
23	chr11:72339000-72350600	Enhancers	Brain Cingulate Gyrus	brain
24	chr11:72339600-72342600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:72339600-72345000	Genic enhancers	Spleen	Spleen
26	chr11:72339800-72345800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr11:72340200-72344600	Enhancers	Psoas Muscle	Psoas
28	chr11:72340200-72345000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr11:72340200-72349400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:72340400-72349400	Enhancers	Fetal Brain Female	brain
31	chr11:72341000-72343400	Weak transcription	Fetal Intestine Small	intestine
32	chr11:72341200-72342400	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr11:72341200-72343400	Enhancers	Colon Smooth Muscle	Colon
34	chr11:72341400-72342200	Enhancers	Stomach Smooth Muscle	stomach
35	chr11:72341400-72342400	Bivalent Enhancer	Fetal Stomach	stomach
36	chr11:72341400-72342400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr11:72341400-72342600	Weak transcription	HSMM	muscle
38	chr11:72341400-72343000	Weak transcription	Hela-S3	cervix
39	chr11:72341400-72343200	Enhancers	HSMMtube	muscle
40	chr11:72341400-72343600	Enhancers	Brain Substantia Nigra	brain
41	chr11:72341400-72344400	Enhancers	Adipose Nuclei	Adipose
42	chr11:72341400-72346200	Enhancers	Right Ventricle	heart
43	chr11:72341600-72343000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:72341600-72343400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:72341600-72343400	Weak transcription	Right Atrium	heart
46	chr11:72341600-72349400	Enhancers	Brain Anterior Caudate	brain

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