Variant report

Variant	rs55822003
Chromosome Location	chr11:72471046-72471047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:72469342-72471726	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:72470854..72473966-chr11:72496751..72500448,3	MCF-7	breast:
2	chr11:72470647..72473547-chr11:72532655..72534550,2	MCF-7	breast:
3	chr11:72468837..72471301-chr11:72524251..72525831,2	MCF-7	breast:
4	chr11:72467688..72472883-chr11:72486333..72493012,8	K562	blood:

Variant related genes	Relation type
STARD10	TF binding region
ENSG00000168010	Chromatin interaction
ENSG00000214530	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55651216	1.00[AMR][1000 genomes]
rs55806368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55970824	1.00[AMR][1000 genomes]
rs56088156	1.00[AMR][1000 genomes]
rs56294550	1.00[AMR][1000 genomes]
rs58387586	1.00[AMR][1000 genomes]
rs61139682	1.00[AMR][1000 genomes]
rs7105097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72464200-72475200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:72464400-72475200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:72464400-72475200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:72464400-72479200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:72464400-72483600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:72464400-72491400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:72464600-72472000	Weak transcription	Hela-S3	cervix
8	chr11:72464600-72473200	Weak transcription	GM12878-XiMat	blood
9	chr11:72464600-72473400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:72464600-72473600	Weak transcription	Primary B cells from cord blood	blood
11	chr11:72464600-72492000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:72464800-72473600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr11:72464800-72483200	Weak transcription	Fetal Thymus	thymus
14	chr11:72465000-72474000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:72466000-72475200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:72466200-72475200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:72466200-72475200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:72466200-72475200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:72466600-72471200	Strong transcription	HepG2	liver
20	chr11:72467800-72472000	Strong transcription	Fetal Intestine Large	intestine
21	chr11:72469200-72472200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:72469400-72472600	Enhancers	Fetal Heart	heart
23	chr11:72469600-72473800	Weak transcription	NHEK	skin
24	chr11:72470000-72471200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:72470000-72472400	Enhancers	Brain Hippocampus Middle	brain
26	chr11:72470000-72474600	Weak transcription	A549	lung
27	chr11:72470000-72491400	Weak transcription	Aorta	Aorta
28	chr11:72470200-72471600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:72470200-72472000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:72470200-72474200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:72470200-72475000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:72470200-72482600	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:72470400-72471600	Weak transcription	HSMMtube	muscle
34	chr11:72470400-72473400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:72470400-72473800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:72470400-72473800	Weak transcription	Left Ventricle	heart
37	chr11:72470400-72477400	Weak transcription	Esophagus	oesophagus
38	chr11:72470400-72479000	Weak transcription	Right Ventricle	heart
39	chr11:72470400-72482000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:72470400-72482200	Weak transcription	Brain Angular Gyrus	brain
41	chr11:72470400-72482200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:72470400-72486800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:72470400-72491000	Weak transcription	Brain Germinal Matrix	brain
44	chr11:72470600-72472000	Weak transcription	NHDF-Ad	bronchial
45	chr11:72470600-72473600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:72470600-72473600	Weak transcription	Liver	Liver
47	chr11:72470600-72474000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr11:72470600-72475200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr11:72470600-72477600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:72470600-72492000	Weak transcription	Primary T cells from cord blood	blood

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