Variant report

Variant	rs56300487
Chromosome Location	chr11:86085728-86085729
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:86085605-86085937	H1-hESC	embryonic stem cell:	n/a	chr11:86085905-86085915
2	SIN3A	chr11:86085555-86086557	H1-hESC	embryonic stem cell:	n/a	n/a
3	SIN3AK20	chr11:86085542-86086002	H1-hESC	embryonic stem cell:	n/a	n/a
4	USF1	chr11:86085655-86086113	H1-hESC	embryonic stem cell:	n/a	n/a
5	SIN3AK20	chr11:86085662-86085965	H1-hESC	embryonic stem cell:	n/a	n/a
6	MXI1	chr11:86085624-86085962	H1-hESC	embryonic stem cell:	n/a	chr11:86085769-86085784
7	JUND	chr11:86085726-86085846	H1-hESC	embryonic stem cell:	n/a	n/a
8	USF1	chr11:86085723-86086062	H1-hESC	embryonic stem cell:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:86085694-86085744	SK-N-SH_RA	brain:	n/a
2	chr11:86085694-86085744	NHBE	bronchial:	n/a
3	chr11:86085715-86085765	GM12892	blood:	n/a
4	chr11:86085694-86085744	GM12891	blood:	n/a
5	chr11:86085694-86085744	HRPEpiC	eye:	n/a
6	chr11:86085694-86085744	HRE	kidney:	n/a
7	chr11:86085694-86085744	NB4	blood:	n/a
8	chr11:86085694-86085744	NHDF-neo	bronchial:	n/a
9	chr11:86085715-86085765	HMEC	breast:	n/a
10	chr11:86085715-86085765	SK-N-SH_RA	brain:	n/a
11	chr11:86085715-86085765	Hepatocyte	liver:	n/a
12	chr11:86085694-86085744	T-47D	breast:	n/a
13	chr11:86085694-86085744	ECC-1	luminal epithelium:	n/a
14	chr11:86085715-86085765	HNPCEpiC	eye:	n/a
15	chr11:86085715-86085765	AG04449	skin:	fetal
16	chr11:86085715-86085765	HCF	heart:	n/a
17	chr11:86085694-86085744	GM12878	blood:	n/a
18	chr11:86085694-86085744	HCPEpiC	choroid plexus:	n/a
19	chr11:86085715-86085765	NH-A	brain:	n/a
20	chr11:86085694-86085744	SKMC	muscle:	n/a
21	chr11:86085715-86085765	HepG2	liver:	n/a
22	chr11:86085715-86085765	HCPEpiC	choroid plexus:	n/a
23	chr11:86085715-86085765	CMK	blood:	n/a
24	chr11:86085715-86085765	NT2-D1	testis:	n/a
25	chr11:86085694-86085744	HepG2	liver:	n/a
26	chr11:86085715-86085765	AoSMC	blood vessel:	n/a
27	chr11:86085715-86085765	HUVEC	blood vessel:	n/a
28	chr11:86085715-86085765	T-47D	breast:	n/a
29	chr11:86085694-86085744	LNCaP	prostate:	n/a
30	chr11:86085694-86085744	H1-hESC	embryonic stem cell:	embryo
31	chr11:86085715-86085765	HRE	kidney:	n/a
32	chr11:86085694-86085744	HCT-116	colon:	n/a
33	chr11:86085694-86085744	BJ	skin:	n/a
34	chr11:86085715-86085765	GM19239	blood:	n/a
35	chr11:86085694-86085744	Caco-2	colon:	n/a
36	chr11:86085694-86085744	HEK293	kidney:	embryo
37	chr11:86085715-86085765	AG09319	gingival:	n/a
38	chr11:86085694-86085744	PrEC	prostate:	n/a
39	chr11:86085715-86085765	Hela-S3	cervix:	n/a
40	chr11:86085715-86085765	AG10803	skin:	n/a
41	chr11:86085715-86085765	U87	brain:	n/a
42	chr11:86085715-86085765	MCF-7	breast:	n/a
43	chr11:86085715-86085765	HAEpiC	amniotic membrane:	n/a
44	chr11:86085715-86085765	ovcar-3	ovarian:	n/a
45	chr11:86085715-86085765	NB4	blood:	n/a
46	chr11:86085715-86085765	HRPEpiC	eye:	n/a
47	chr11:86085715-86085765	LNCaP	prostate:	n/a
48	chr11:86085715-86085765	PFSK-1	brain:	n/a
49	chr11:86085715-86085765	H1-hESC	embryonic stem cell:	embryo
50	chr11:86085694-86085744	ovcar-3	ovarian:	n/a

No data

Variant related genes	Relation type
CCDC81	TF binding region
CCDC81	CpG island

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11603604	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11607075	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17745878	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1955189	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55904608	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56153444	0.81[ASN][1000 genomes]
rs61904358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61904359	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906691	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7946477	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56300487	C11orf73	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86083000-86085800	Weak transcription	Esophagus	oesophagus
2	chr11:86084400-86089200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86085200-86085800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:86085200-86086000	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr11:86085200-86086200	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:86085200-86086200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:86085200-86086200	Active TSS	Osteobl	bone
8	chr11:86085400-86085800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:86085400-86085800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:86085400-86085800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:86085400-86085800	Enhancers	Fetal Thymus	thymus
12	chr11:86085400-86085800	Active TSS	Right Ventricle	heart
13	chr11:86085400-86085800	Enhancers	HepG2	liver
14	chr11:86085400-86086000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr11:86085400-86086000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:86085400-86086000	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr11:86085400-86086000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:86085400-86086000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:86085400-86086000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:86085400-86086000	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr11:86085400-86086000	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr11:86085400-86086000	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr11:86085400-86086000	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr11:86085400-86086000	Flanking Active TSS	HUVEC	blood vessel
25	chr11:86085400-86086000	Active TSS	NHDF-Ad	bronchial
26	chr11:86085400-86086200	Active TSS	H1 Cell Line	embryonic stem cell
27	chr11:86085400-86086200	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr11:86085400-86086200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr11:86085400-86086200	Enhancers	Fetal Lung	lung
30	chr11:86085400-86086200	Flanking Active TSS	Fetal Muscle Leg	muscle
31	chr11:86085400-86086200	Flanking Active TSS	Ovary	ovary
32	chr11:86085400-86086400	Active TSS	H9 Cell Line	embryonic stem cell
33	chr11:86085400-86086400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:86085400-86086400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:86085400-86086600	Active TSS	Brain Hippocampus Middle	brain
36	chr11:86085400-86086800	Active TSS	Brain Anterior Caudate	brain
37	chr11:86085600-86085800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:86085600-86085800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
39	chr11:86085600-86085800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:86085600-86085800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:86085600-86085800	Active TSS	Aorta	Aorta
42	chr11:86085600-86085800	Weak transcription	Fetal Heart	heart
43	chr11:86085600-86085800	Active TSS	Lung	lung
44	chr11:86085600-86086000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:86085600-86086000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:86085600-86086000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:86085600-86086000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:86085600-86086000	Active TSS	Brain Cingulate Gyrus	brain
49	chr11:86085600-86086000	Active TSS	Colon Smooth Muscle	Colon
50	chr11:86085600-86086000	Active TSS	Duodenum Mucosa	Duodenum

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