Variant report

Variant	rs7946477
Chromosome Location	chr11:86083112-86083113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11234601	0.86[JPT][hapmap]
rs11603604	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11607075	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12290614	1.00[CHB][hapmap]
rs12295985	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17745878	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1955189	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55904608	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56153444	0.81[ASN][1000 genomes]
rs56300487	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904358	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61904359	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61906691	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7110770	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9971532	0.86[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7946477	C11orf73	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86080600-86084200	Enhancers	HMEC	breast
2	chr11:86081600-86084600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:86081800-86084400	Enhancers	NHEK	skin
4	chr11:86082000-86083400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:86082000-86084000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:86082400-86085400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:86082600-86083200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86082600-86083200	Enhancers	Fetal Brain Male	brain
9	chr11:86082600-86084400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:86083000-86083200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:86083000-86083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:86083000-86085000	Weak transcription	HUVEC	blood vessel
13	chr11:86083000-86085400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:86083000-86085600	Weak transcription	Fetal Brain Female	brain
15	chr11:86083000-86085600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:86083000-86085800	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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