Variant report

Variant	rs11603604
Chromosome Location	chr11:86070817-86070818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11234601	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11607075	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12289477	0.90[ASN][1000 genomes]
rs12290614	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs12292865	0.86[ASN][1000 genomes]
rs12295985	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs17745878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55904608	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56153444	0.89[ASN][1000 genomes]
rs56300487	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61904358	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61904359	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61906691	0.82[AMR][1000 genomes]
rs7110770	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs7946477	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9971532	0.86[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11603604	C11orf73	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86050000-86072000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:86058200-86071200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:86067000-86074600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:86067000-86081200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:86068400-86072200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:86068600-86072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:86068600-86072000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:86069200-86072000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:86069200-86072000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:86069400-86071800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:86069400-86071800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:86070000-86071800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:86070400-86071600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:86070400-86071600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:86070800-86071000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:86070800-86072200	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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