Variant report

Variant	rs61904359
Chromosome Location	chr11:86081503-86081504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11603604	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11607075	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17745878	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1955189	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55904608	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56153444	0.81[ASN][1000 genomes]
rs56300487	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904358	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61906691	0.85[EUR][1000 genomes]
rs7946477	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61904359	C11orf73	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86076600-86082400	Weak transcription	NHDF-Ad	bronchial
2	chr11:86080000-86082000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:86080600-86081600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:86080600-86081600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr11:86080600-86081800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:86080600-86084200	Enhancers	HMEC	breast
7	chr11:86080800-86082800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:86081000-86082000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:86081200-86081600	Enhancers	Esophagus	oesophagus
10	chr11:86081400-86081600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:86081400-86082600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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