Variant report

Variant	rs56332553
Chromosome Location	chr6:133994563-133994564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55645130	1.00[AMR][1000 genomes]
rs55863046	1.00[AMR][1000 genomes]
rs55963381	1.00[AMR][1000 genomes]
rs56128814	1.00[AMR][1000 genomes]
rs56353427	1.00[AMR][1000 genomes]
rs56788898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57022180	1.00[AMR][1000 genomes]
rs58069152	1.00[AMR][1000 genomes]
rs60210492	1.00[AMR][1000 genomes]
rs6926676	1.00[AMR][1000 genomes]
rs73546811	1.00[AMR][1000 genomes]
rs73546832	1.00[AMR][1000 genomes]
rs73546898	1.00[AMR][1000 genomes]
rs73548873	1.00[AMR][1000 genomes]
rs73548875	1.00[AMR][1000 genomes]
rs73551414	1.00[AMR][1000 genomes]
rs73553005	1.00[AMR][1000 genomes]
rs73553023	1.00[AMR][1000 genomes]
rs73553034	1.00[AMR][1000 genomes]
rs73553036	1.00[AMR][1000 genomes]
rs73553043	1.00[AMR][1000 genomes]
rs73553058	1.00[AMR][1000 genomes]
rs73553059	1.00[AMR][1000 genomes]
rs73553068	1.00[AMR][1000 genomes]
rs73553070	1.00[AMR][1000 genomes]
rs73553072	1.00[AMR][1000 genomes]
rs73553074	1.00[AMR][1000 genomes]
rs73553075	1.00[AMR][1000 genomes]
rs73553076	1.00[AMR][1000 genomes]
rs73553084	1.00[AMR][1000 genomes]
rs73553088	1.00[AMR][1000 genomes]
rs73555309	1.00[AMR][1000 genomes]
rs73555351	1.00[AMR][1000 genomes]
rs73557143	1.00[AMR][1000 genomes]
rs73557178	1.00[AMR][1000 genomes]
rs73557189	1.00[AMR][1000 genomes]
rs73559222	1.00[AMR][1000 genomes]
rs73559294	1.00[AMR][1000 genomes]
rs73776065	1.00[AMR][1000 genomes]
rs73776709	1.00[AMR][1000 genomes]
rs73776715	1.00[AMR][1000 genomes]
rs7746146	1.00[AMR][1000 genomes]
rs7761492	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133988800-133995600	Weak transcription	Fetal Lung	lung
2	chr6:133994000-133994600	Enhancers	Fetal Kidney	kidney
3	chr6:133994200-133994600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:133994200-133994600	Enhancers	Ovary	ovary
5	chr6:133994400-133995000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:133994400-134001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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