Variant report

Variant	rs73776065
Chromosome Location	chr6:133911508-133911509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs55645130	1.00[AMR][1000 genomes]
rs55863046	1.00[AMR][1000 genomes]
rs55963381	1.00[AMR][1000 genomes]
rs56128814	1.00[AMR][1000 genomes]
rs56332553	1.00[AMR][1000 genomes]
rs56353427	1.00[AMR][1000 genomes]
rs56788898	1.00[AMR][1000 genomes]
rs57022180	1.00[AMR][1000 genomes]
rs58069152	1.00[AMR][1000 genomes]
rs60210492	1.00[AMR][1000 genomes]
rs6926676	1.00[AMR][1000 genomes]
rs6936392	1.00[AMR][1000 genomes]
rs73546811	1.00[AMR][1000 genomes]
rs73546832	1.00[AMR][1000 genomes]
rs73546898	1.00[AMR][1000 genomes]
rs73548873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551414	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553005	1.00[AMR][1000 genomes]
rs73553023	1.00[AMR][1000 genomes]
rs73553034	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553036	1.00[AMR][1000 genomes]
rs73553043	1.00[AMR][1000 genomes]
rs73553058	1.00[AMR][1000 genomes]
rs73553059	1.00[AMR][1000 genomes]
rs73553068	1.00[AMR][1000 genomes]
rs73553070	1.00[AMR][1000 genomes]
rs73553072	1.00[AMR][1000 genomes]
rs73553074	1.00[AMR][1000 genomes]
rs73553075	1.00[AMR][1000 genomes]
rs73553076	1.00[AMR][1000 genomes]
rs73553084	1.00[AMR][1000 genomes]
rs73553088	1.00[AMR][1000 genomes]
rs73555309	1.00[AMR][1000 genomes]
rs73555351	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557143	1.00[AMR][1000 genomes]
rs73557178	1.00[AMR][1000 genomes]
rs73557189	1.00[AMR][1000 genomes]
rs73559222	1.00[AMR][1000 genomes]
rs73559294	1.00[AMR][1000 genomes]
rs73776709	1.00[AMR][1000 genomes]
rs73776715	1.00[AMR][1000 genomes]
rs7746146	1.00[AMR][1000 genomes]
rs7761492	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133906000-133912000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:133908200-133911800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:133908400-133911800	Weak transcription	Fetal Stomach	stomach
4	chr6:133908600-133911600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:133908600-133911600	Weak transcription	HSMMtube	muscle
6	chr6:133908600-133911800	Weak transcription	NHLF	lung
7	chr6:133909600-133912200	Weak transcription	NHDF-Ad	bronchial
8	chr6:133909800-133911600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:133909800-133911600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:133909800-133911600	Weak transcription	Osteobl	bone
11	chr6:133909800-133912000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:133909800-133912000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:133910400-133913400	Weak transcription	Fetal Lung	lung
14	chr6:133911200-133912000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:133911200-133914000	Enhancers	HMEC	breast
16	chr6:133911400-133911600	Enhancers	HSMM	muscle
17	chr6:133911400-133911800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:133911400-133911800	Active TSS	A549	lung
19	chr6:133911400-133912000	Flanking Active TSS	NHEK	skin
20	chr6:133911400-133912400	Enhancers	Fetal Kidney	kidney
21	chr6:133911400-133912800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:133911400-133913800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:133911400-133913800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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