Variant report

Variant	rs7746146
Chromosome Location	chr6:134028503-134028504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134020858..134023121-chr6:134025538..134028514,2	K562	blood:
2	chr6:134028426..134030950-chr6:134042269..134044112,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55645130	1.00[AMR][1000 genomes]
rs55863046	1.00[AMR][1000 genomes]
rs55963381	1.00[AMR][1000 genomes]
rs56128814	1.00[AMR][1000 genomes]
rs56332553	1.00[AMR][1000 genomes]
rs56353427	1.00[AMR][1000 genomes]
rs56788898	1.00[AMR][1000 genomes]
rs57022180	1.00[AMR][1000 genomes]
rs58069152	1.00[AMR][1000 genomes]
rs60210492	1.00[AMR][1000 genomes]
rs6926676	1.00[AMR][1000 genomes]
rs73546811	1.00[AMR][1000 genomes]
rs73546832	1.00[AMR][1000 genomes]
rs73546898	1.00[AMR][1000 genomes]
rs73548873	1.00[AMR][1000 genomes]
rs73548875	1.00[AMR][1000 genomes]
rs73551414	1.00[AMR][1000 genomes]
rs73553005	1.00[AMR][1000 genomes]
rs73553023	1.00[AMR][1000 genomes]
rs73553034	1.00[AMR][1000 genomes]
rs73553036	1.00[AMR][1000 genomes]
rs73553043	1.00[AMR][1000 genomes]
rs73553058	1.00[AMR][1000 genomes]
rs73553059	1.00[AMR][1000 genomes]
rs73553068	1.00[AMR][1000 genomes]
rs73553070	1.00[AMR][1000 genomes]
rs73553072	1.00[AMR][1000 genomes]
rs73553074	1.00[AMR][1000 genomes]
rs73553075	1.00[AMR][1000 genomes]
rs73553076	1.00[AMR][1000 genomes]
rs73553084	1.00[AMR][1000 genomes]
rs73553088	1.00[AMR][1000 genomes]
rs73555309	1.00[AMR][1000 genomes]
rs73555351	1.00[AMR][1000 genomes]
rs73557143	1.00[AMR][1000 genomes]
rs73557178	1.00[AMR][1000 genomes]
rs73557189	1.00[AMR][1000 genomes]
rs73559222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73559294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776065	1.00[AMR][1000 genomes]
rs73776709	1.00[AMR][1000 genomes]
rs73776715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761492	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134002400-134028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:134020600-134028600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:134023200-134040400	Weak transcription	Ovary	ovary
4	chr6:134024800-134029400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:134025000-134028600	Enhancers	NHDF-Ad	bronchial
6	chr6:134025000-134028600	Enhancers	Osteobl	bone
7	chr6:134025000-134029000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:134025200-134029000	Enhancers	HSMMtube	muscle
9	chr6:134025200-134029200	Enhancers	HSMM	muscle
10	chr6:134025200-134029200	Enhancers	NHLF	lung
11	chr6:134025400-134028800	Enhancers	NH-A	brain
12	chr6:134026200-134029000	Enhancers	HMEC	breast
13	chr6:134026800-134028600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:134027400-134028600	Weak transcription	A549	lung
15	chr6:134027400-134029200	Enhancers	Fetal Brain Female	brain
16	chr6:134027600-134028600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:134028000-134029200	Enhancers	Fetal Brain Male	brain
18	chr6:134028200-134028800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:134028400-134028800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:134028400-134028800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:134028400-134028800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:134028400-134028800	Enhancers	Fetal Lung	lung
23	chr6:134028400-134028800	Enhancers	Fetal Stomach	stomach
24	chr6:134028400-134029200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:134028400-134029200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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