Variant report

Variant	rs56335858
Chromosome Location	chr6:27586240-27586241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27583659..27587371-chr6:27597260..27601233,4	K562	blood:
2	chr6:27583544..27586615-chr6:27617809..27619941,3	K562	blood:
3	chr6:27585819..27588384-chr6:27617472..27619581,2	MCF-7	breast:
4	chr6:27585304..27588262-chr6:27590023..27594531,5	K562	blood:
5	chr6:27585919..27588728-chr6:27591058..27593612,2	MCF-7	breast:
6	chr6:27572695..27575241-chr6:27583548..27587742,4	K562	blood:
7	chr6:27572199..27574195-chr6:27584979..27586709,2	K562	blood:
8	chr6:27584017..27586376-chr6:27774964..27777564,2	MCF-7	breast:
9	chr6:27112676..27114688-chr6:27586165..27588609,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196747	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000238648	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55713702	0.81[AFR][1000 genomes]
rs55755099	0.81[AFR][1000 genomes]
rs56758520	0.93[AFR][1000 genomes]
rs61415880	0.93[AFR][1000 genomes]
rs73739178	0.81[AFR][1000 genomes]
rs73739180	0.81[AFR][1000 genomes]
rs73739182	0.87[AFR][1000 genomes]
rs73739184	0.81[AFR][1000 genomes]
rs73739185	0.93[AFR][1000 genomes]
rs73739187	0.93[AFR][1000 genomes]
rs73739190	0.93[AFR][1000 genomes]
rs73739751	0.81[AFR][1000 genomes]
rs73739754	0.87[AFR][1000 genomes]
rs73739769	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1030256	chr6:27477726-27605842	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1025862	chr6:27480227-27605321	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv1017347	chr6:27483816-27605842	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1025572	chr6:27487852-27604454	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv538167	chr6:27487852-27604454	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1018107	chr6:27503525-27596736	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv538168	chr6:27503525-27596736	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
11	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27584200-27586400	Active TSS	H1 Cell Line	embryonic stem cell
2	chr6:27584400-27586600	Active TSS	H9 Cell Line	embryonic stem cell
3	chr6:27584600-27586400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:27584600-27586400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:27584600-27586600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:27584600-27586600	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:27584600-27586600	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:27584600-27586600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:27584600-27586800	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:27585000-27586400	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr6:27585000-27586600	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr6:27585000-27586800	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:27585200-27586400	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:27585800-27586400	Flanking Active TSS	K562	blood
15	chr6:27586000-27586400	Bivalent Enhancer	Fetal Intestine Large	intestine
16	chr6:27586000-27586400	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr6:27586000-27586400	Flanking Active TSS	Placenta	Placenta
18	chr6:27586000-27586400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:27586000-27586400	Flanking Active TSS	Hela-S3	cervix
20	chr6:27586200-27586400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:27586200-27586400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:27586200-27586400	Bivalent Enhancer	HepG2	liver
23	chr6:27586200-27586400	Enhancers	HUVEC	blood vessel
24	chr6:27586200-27586600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:27586200-27592200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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