Variant report

Variant	rs73739769
Chromosome Location	chr6:27631268-27631269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27128425..27130087-chr6:27629956..27632184,2	MCF-7	breast:
2	chr6:27115470..27118070-chr6:27629887..27631658,2	K562	blood:
3	chr6:27630813..27632433-chr6:27638083..27640183,2	K562	blood:
4	chr6:27617128..27618661-chr6:27630214..27631723,2	K562	blood:
5	chr6:27630640..27633074-chr6:27634485..27635995,2	K562	blood:
6	chr6:27625755..27627642-chr6:27629056..27632666,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55713702	0.87[AFR][1000 genomes]
rs55755099	0.87[AFR][1000 genomes]
rs55810724	0.86[AFR][1000 genomes]
rs56335858	0.93[AFR][1000 genomes]
rs56758520	1.00[AFR][1000 genomes]
rs57270702	0.86[AFR][1000 genomes]
rs60242525	0.86[AFR][1000 genomes]
rs61415880	1.00[AFR][1000 genomes]
rs73739178	0.87[AFR][1000 genomes]
rs73739180	0.87[AFR][1000 genomes]
rs73739182	0.93[AFR][1000 genomes]
rs73739184	0.87[AFR][1000 genomes]
rs73739185	1.00[AFR][1000 genomes]
rs73739187	1.00[AFR][1000 genomes]
rs73739190	1.00[AFR][1000 genomes]
rs73739607	0.86[AFR][1000 genomes]
rs73739608	0.86[AFR][1000 genomes]
rs73739609	0.86[AFR][1000 genomes]
rs73739686	0.86[AFR][1000 genomes]
rs73739687	0.86[AFR][1000 genomes]
rs73739751	0.87[AFR][1000 genomes]
rs73739754	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv525669	chr6:27623511-27657647	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv883511	chr6:27623511-27660508	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27630800-27634600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:27631000-27632000	Active TSS	A549	lung
3	chr6:27631000-27634400	Weak transcription	K562	blood
4	chr6:27631200-27631600	Active TSS	Placenta	Placenta

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