Variant report

Variant	rs73739190
Chromosome Location	chr6:27592307-27592308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27588632..27593657-chr6:27594318..27600598,11	K562	blood:
2	chr6:27585304..27588262-chr6:27590023..27594531,5	K562	blood:
3	chr6:27590776..27592562-chr6:27661680..27663552,2	MCF-7	breast:
4	chr6:27577554..27579986-chr6:27591493..27593783,2	K562	blood:
5	chr6:27585919..27588728-chr6:27591058..27593612,2	MCF-7	breast:
6	chr6:27591455..27593158-chr6:27596051..27599012,2	MCF-7	breast:
7	chr6:27591195..27593958-chr6:27774949..27777675,2	K562	blood:

Variant related genes	Relation type
ENSG00000238648	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000185130	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55713702	0.87[AFR][1000 genomes]
rs55755099	0.87[AFR][1000 genomes]
rs55810724	0.86[AFR][1000 genomes]
rs56335858	0.93[AFR][1000 genomes]
rs56758520	1.00[AFR][1000 genomes]
rs57270702	0.86[AFR][1000 genomes]
rs60242525	0.86[AFR][1000 genomes]
rs61415880	1.00[AFR][1000 genomes]
rs73739178	0.87[AFR][1000 genomes]
rs73739180	0.87[AFR][1000 genomes]
rs73739182	0.93[AFR][1000 genomes]
rs73739184	0.87[AFR][1000 genomes]
rs73739185	1.00[AFR][1000 genomes]
rs73739187	1.00[AFR][1000 genomes]
rs73739607	0.86[AFR][1000 genomes]
rs73739608	0.86[AFR][1000 genomes]
rs73739609	0.86[AFR][1000 genomes]
rs73739686	0.86[AFR][1000 genomes]
rs73739687	0.86[AFR][1000 genomes]
rs73739751	0.87[AFR][1000 genomes]
rs73739754	0.93[AFR][1000 genomes]
rs73739769	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1030256	chr6:27477726-27605842	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1025862	chr6:27480227-27605321	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv1017347	chr6:27483816-27605842	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1025572	chr6:27487852-27604454	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv538167	chr6:27487852-27604454	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1018107	chr6:27503525-27596736	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv538168	chr6:27503525-27596736	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
11	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27591200-27592600	Enhancers	K562	blood
2	chr6:27591600-27592400	Enhancers	Duodenum Mucosa	Duodenum
3	chr6:27592000-27593200	Enhancers	Fetal Intestine Large	intestine
4	chr6:27592200-27593000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:27592200-27593400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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