Variant report

Variant	rs73739687
Chromosome Location	chr6:27691709-27691710
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27684698..27689044-chr6:27689656..27693289,4	K562	blood:
2	chr6:27690338..27692656-chr6:27698623..27701642,3	K562	blood:
3	chr6:27687897..27691780-chr6:27691811..27694513,3	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55810724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56096322	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56358872	1.00[AMR][1000 genomes]
rs56393640	1.00[AMR][1000 genomes]
rs56758520	0.86[AFR][1000 genomes]
rs57044733	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57270702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57606279	1.00[AMR][1000 genomes]
rs58040059	1.00[AMR][1000 genomes]
rs58677321	1.00[AMR][1000 genomes]
rs60242525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60512267	1.00[AMR][1000 genomes]
rs60542036	1.00[AMR][1000 genomes]
rs60566574	1.00[AMR][1000 genomes]
rs61415880	0.86[AFR][1000 genomes]
rs61499563	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739185	0.86[AFR][1000 genomes]
rs73739187	0.86[AFR][1000 genomes]
rs73739190	0.86[AFR][1000 genomes]
rs73739605	1.00[AMR][1000 genomes]
rs73739607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739689	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739691	1.00[AMR][1000 genomes]
rs73739696	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739769	0.86[AFR][1000 genomes]
rs73740807	1.00[AMR][1000 genomes]
rs73740808	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740809	1.00[AMR][1000 genomes]
rs73740816	1.00[AMR][1000 genomes]
rs73740819	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740835	1.00[AMR][1000 genomes]
rs73740839	1.00[AMR][1000 genomes]
rs73740871	1.00[AMR][1000 genomes]
rs73740872	1.00[AMR][1000 genomes]
rs73740874	1.00[AMR][1000 genomes]
rs73741616	1.00[AMR][1000 genomes]
rs73741620	1.00[AMR][1000 genomes]
rs73741622	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741623	1.00[AMR][1000 genomes]
rs9767465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv3327708	chr6:27683503-27692934	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27681600-27692200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:27689600-27694200	Weak transcription	A549	lung
3	chr6:27690200-27694400	Weak transcription	K562	blood
4	chr6:27691600-27691800	Enhancers	NHEK	skin
5	chr6:27691600-27692600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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