Variant report

Variant	rs73739696
Chromosome Location	chr6:27713170-27713171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27113856..27116245-chr6:27711458..27713509,2	K562	blood:
2	chr6:27705791..27707842-chr6:27711805..27713945,2	K562	blood:
3	chr6:27114745..27116366-chr6:27711280..27713509,2	K562	blood:
4	chr6:27705667..27707842-chr6:27712445..27714463,2	K562	blood:

Variant related genes	Relation type
ENSG00000216915	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197903	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55761446	1.00[AMR][1000 genomes]
rs55810724	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56096322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56358872	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56393640	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57044733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57270702	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57606279	1.00[AMR][1000 genomes]
rs58040059	1.00[AMR][1000 genomes]
rs58677321	1.00[AMR][1000 genomes]
rs60242525	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60512267	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60542036	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60566574	1.00[AMR][1000 genomes]
rs61499563	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739605	1.00[AMR][1000 genomes]
rs73739607	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739608	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739609	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739686	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739687	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739691	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740807	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740809	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740816	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740835	1.00[AMR][1000 genomes]
rs73740839	1.00[AMR][1000 genomes]
rs73740871	1.00[AMR][1000 genomes]
rs73740872	1.00[AMR][1000 genomes]
rs73740874	1.00[AMR][1000 genomes]
rs73741616	1.00[AMR][1000 genomes]
rs73741618	0.82[AFR][1000 genomes]
rs73741620	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741623	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9767465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27707000-27714600	Weak transcription	GM12878-XiMat	blood
2	chr6:27712800-27713200	Enhancers	K562	blood

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