Variant report

Variant	rs73740807
Chromosome Location	chr6:27751056-27751057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27114055..27115992-chr6:27750926..27753050,2	K562	blood:
2	chr6:27113391..27118282-chr6:27750926..27755180,4	K562	blood:
3	chr6:27750078..27752757-chr6:27753756..27756420,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197903	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000265565	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55761446	1.00[AMR][1000 genomes]
rs55810724	1.00[AMR][1000 genomes]
rs56096322	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56358872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56393640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57044733	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57270702	1.00[AMR][1000 genomes]
rs57606279	1.00[AMR][1000 genomes]
rs58040059	1.00[AMR][1000 genomes]
rs58677321	1.00[AMR][1000 genomes]
rs60242525	1.00[AMR][1000 genomes]
rs60512267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60542036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60566574	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61499563	1.00[AMR][1000 genomes]
rs73739605	1.00[AMR][1000 genomes]
rs73739607	1.00[AMR][1000 genomes]
rs73739608	1.00[AMR][1000 genomes]
rs73739609	1.00[AMR][1000 genomes]
rs73739686	1.00[AMR][1000 genomes]
rs73739687	1.00[AMR][1000 genomes]
rs73739689	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739696	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740808	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740819	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740835	1.00[AMR][1000 genomes]
rs73740839	1.00[AMR][1000 genomes]
rs73740871	1.00[AMR][1000 genomes]
rs73740872	1.00[AMR][1000 genomes]
rs73740874	1.00[AMR][1000 genomes]
rs73741616	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741618	1.00[AFR][1000 genomes]
rs73741620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741622	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9767465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv1017057	chr6:27745777-27789683	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	125 gene(s)	inside rSNPs	diseases
7	nsv981120	chr6:27746371-27751747	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
8	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27745600-27753200	Weak transcription	HepG2	liver
2	chr6:27748800-27754600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:27750000-27751200	Enhancers	Fetal Intestine Small	intestine
4	chr6:27750000-27751600	Enhancers	K562	blood
5	chr6:27750200-27751400	Enhancers	Fetal Intestine Large	intestine
6	chr6:27751000-27751200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links