Variant report

Variant	rs73740809
Chromosome Location	chr6:27754123-27754124
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27750078..27752757-chr6:27753756..27756420,3	MCF-7	breast:
2	chr6:27753086..27755536-chr6:27756533..27760305,3	MCF-7	breast:
3	chr6:27745777..27747723-chr6:27753889..27756682,2	MCF-7	breast:
4	chr6:27113391..27118282-chr6:27750926..27755180,4	K562	blood:
5	chr6:27753667..27756583-chr6:27759368..27762944,3	MCF-7	breast:
6	chr6:27752995..27755602-chr6:27774176..27776282,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196747	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000197903	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55761446	1.00[AMR][1000 genomes]
rs55810724	1.00[AMR][1000 genomes]
rs56096322	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56358872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56393640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57044733	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57270702	1.00[AMR][1000 genomes]
rs57606279	1.00[AMR][1000 genomes]
rs58040059	1.00[AMR][1000 genomes]
rs58677321	1.00[AMR][1000 genomes]
rs60242525	1.00[AMR][1000 genomes]
rs60512267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60542036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60566574	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61499563	1.00[AMR][1000 genomes]
rs73739605	1.00[AMR][1000 genomes]
rs73739607	1.00[AMR][1000 genomes]
rs73739608	1.00[AMR][1000 genomes]
rs73739609	1.00[AMR][1000 genomes]
rs73739686	1.00[AMR][1000 genomes]
rs73739687	1.00[AMR][1000 genomes]
rs73739689	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739696	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740808	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740819	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740835	1.00[AMR][1000 genomes]
rs73740839	1.00[AMR][1000 genomes]
rs73740871	1.00[AMR][1000 genomes]
rs73740872	1.00[AMR][1000 genomes]
rs73740874	1.00[AMR][1000 genomes]
rs73741616	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741618	1.00[AFR][1000 genomes]
rs73741620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741622	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9767465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv1017057	chr6:27745777-27789683	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	125 gene(s)	inside rSNPs	diseases
7	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27748800-27754600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:27751600-27759200	Weak transcription	Colonic Mucosa	Colon
3	chr6:27752600-27754200	Enhancers	Fetal Intestine Large	intestine
4	chr6:27752600-27754200	Enhancers	Fetal Intestine Small	intestine
5	chr6:27753400-27755200	Enhancers	K562	blood
6	chr6:27753800-27759000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:27754000-27759200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links