Variant report

Variant	rs73741622
Chromosome Location	chr6:27736324-27736325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27114866..27116951-chr6:27736291..27737934,2	K562	blood:
2	chr6:27734440..27736801-chr6:27737530..27740059,2	MCF-7	breast:
3	chr6:27735339..27736956-chr6:27780482..27782528,2	MCF-7	breast:
4	chr6:27729351..27732298-chr6:27734296..27736839,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265565	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55761446	1.00[AMR][1000 genomes]
rs55810724	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56096322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56358872	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56393640	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57044733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57270702	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57606279	1.00[AMR][1000 genomes]
rs58040059	1.00[AMR][1000 genomes]
rs58677321	1.00[AMR][1000 genomes]
rs60242525	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60512267	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60542036	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60566574	1.00[AMR][1000 genomes]
rs61499563	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739605	1.00[AMR][1000 genomes]
rs73739607	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739608	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739609	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739686	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739687	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739691	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740807	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740809	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740816	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740835	1.00[AMR][1000 genomes]
rs73740839	1.00[AMR][1000 genomes]
rs73740871	1.00[AMR][1000 genomes]
rs73740872	1.00[AMR][1000 genomes]
rs73740874	1.00[AMR][1000 genomes]
rs73741616	1.00[AMR][1000 genomes]
rs73741618	0.82[AFR][1000 genomes]
rs73741620	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73741623	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9767465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27725600-27743000	Weak transcription	Right Atrium	heart
2	chr6:27726400-27738600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:27729600-27737000	Weak transcription	K562	blood
4	chr6:27730600-27740000	Weak transcription	Spleen	Spleen
5	chr6:27730800-27739000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:27730800-27740000	Weak transcription	Primary T cells from cord blood	blood
7	chr6:27736200-27736400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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