Variant report

Variant	rs73740871
Chromosome Location	chr6:27882474-27882475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27880639..27883461-chr7:11306851..11309270,2	MCF-7	breast:
2	chr6:27882241..27884858-chr6:27901500..27903298,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs55711161	0.91[AFR][1000 genomes]
rs55761446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55810724	1.00[AMR][1000 genomes]
rs56096322	1.00[AMR][1000 genomes]
rs56358872	1.00[AMR][1000 genomes]
rs56393640	1.00[AMR][1000 genomes]
rs57044733	1.00[AMR][1000 genomes]
rs57270702	1.00[AMR][1000 genomes]
rs57606279	1.00[AMR][1000 genomes]
rs58040059	1.00[AMR][1000 genomes]
rs58677321	1.00[AMR][1000 genomes]
rs60242525	1.00[AMR][1000 genomes]
rs60512267	1.00[AMR][1000 genomes]
rs60542036	1.00[AMR][1000 genomes]
rs60566574	1.00[AMR][1000 genomes]
rs61499563	1.00[AMR][1000 genomes]
rs73739605	1.00[AMR][1000 genomes]
rs73739607	1.00[AMR][1000 genomes]
rs73739608	1.00[AMR][1000 genomes]
rs73739609	1.00[AMR][1000 genomes]
rs73739686	1.00[AMR][1000 genomes]
rs73739687	1.00[AMR][1000 genomes]
rs73739689	1.00[AMR][1000 genomes]
rs73739691	1.00[AMR][1000 genomes]
rs73739696	1.00[AMR][1000 genomes]
rs73740807	1.00[AMR][1000 genomes]
rs73740808	1.00[AMR][1000 genomes]
rs73740809	1.00[AMR][1000 genomes]
rs73740816	1.00[AMR][1000 genomes]
rs73740819	1.00[AMR][1000 genomes]
rs73740835	1.00[AMR][1000 genomes]
rs73740839	1.00[AMR][1000 genomes]
rs73740872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73740882	1.00[AMR][1000 genomes]
rs73741616	1.00[AMR][1000 genomes]
rs73741620	1.00[AMR][1000 genomes]
rs73741622	1.00[AMR][1000 genomes]
rs73741623	1.00[AMR][1000 genomes]
rs9767465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
3	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
4	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
5	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	nsv970030	chr6:27880682-27909942	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27871600-27883200	Weak transcription	Hela-S3	cervix
2	chr6:27882200-27886800	Weak transcription	K562	blood

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