Variant report

Variant	rs73739180
Chromosome Location	chr6:27577154-27577155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27486324..27487326-chr6:27576697..27577724,6	K562	blood:
2	chr6:27576090..27578775-chr6:27859408..27861682,2	K562	blood:
3	chr6:27485493..27487721-chr6:27575834..27578755,2	MCF-7	breast:
4	chr6:27573292..27575070-chr6:27575165..27577437,2	K562	blood:
5	chr6:27480119..27481874-chr6:27576209..27578820,2	MCF-7	breast:
6	chr6:27571900..27575468-chr6:27575673..27580181,6	K562	blood:
7	chr6:27485746..27487323-chr6:27576399..27577877,8	MCF-7	breast:
8	chr6:27561158..27562772-chr6:27575772..27577802,2	K562	blood:
9	chr6:27514577..27516829-chr6:27575632..27577856,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000197153	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55991522	0.89[AFR][1000 genomes]
rs56335858	0.81[AFR][1000 genomes]
rs56758520	0.87[AFR][1000 genomes]
rs57770135	0.89[AFR][1000 genomes]
rs61415880	0.87[AFR][1000 genomes]
rs73739177	0.89[AFR][1000 genomes]
rs73739178	1.00[AFR][1000 genomes]
rs73739179	0.89[AFR][1000 genomes]
rs73739182	0.81[AFR][1000 genomes]
rs73739185	0.87[AFR][1000 genomes]
rs73739187	0.87[AFR][1000 genomes]
rs73739190	0.87[AFR][1000 genomes]
rs73739754	0.81[AFR][1000 genomes]
rs73739769	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1030256	chr6:27477726-27605842	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1025862	chr6:27480227-27605321	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv1017347	chr6:27483816-27605842	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1025572	chr6:27487852-27604454	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv538167	chr6:27487852-27604454	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv883509	chr6:27492906-27586181	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1018107	chr6:27503525-27596736	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv538168	chr6:27503525-27596736	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
12	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27574000-27578800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:27576200-27577600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:27576200-27577600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:27576200-27577600	Enhancers	HMEC	breast
5	chr6:27576200-27577800	Enhancers	NHEK	skin
6	chr6:27576400-27577600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:27576600-27577600	Enhancers	HepG2	liver
8	chr6:27576800-27577200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:27576800-27577200	Enhancers	A549	lung
10	chr6:27576800-27577600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:27576800-27577600	Flanking Active TSS	Hela-S3	cervix
12	chr6:27576800-27577600	Enhancers	K562	blood
13	chr6:27577000-27577200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:27577000-27577200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:27577000-27577200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:27577000-27577200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:27577000-27577200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:27577000-27577200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
19	chr6:27577000-27577200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:27577000-27577400	Enhancers	Osteobl	bone

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